Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0525.Seq
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   6.6  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    25   8.7  

>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 429 EELEEQRKHDEQKKKWRKEQ 370
           + L+EQR+  EQKK+ +KE+
Sbjct: 138 QRLKEQREKKEQKKEQKKEK 157


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -3

Query: 531 NILSLFKSITK*NHKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKE 373
           ++ SL   + K   ++  G F  +       T+ ++ ++ RK  E  +KW++E
Sbjct: 614 HVSSLMPQVVKKRRRLEDGSFEEYLDYLFPDTATDQGDKMRKMLELSRKWKEE 666


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 579 LHHFIFNNNFKSLQYLNILSLFKSIT 502
           + +F FN N K + YL++  L K ++
Sbjct: 155 MSYFFFNKNMKRMLYLSLHGLGKEVS 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,538,150
Number of Sequences: 5004
Number of extensions: 22073
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)