Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0525.Seq
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      39   0.003
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.2  
SB_11393| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13)           27   9.1  
SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  
SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1080

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/37 (43%), Positives = 27/37 (72%)
 Frame = -3

Query: 480 RGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 370
           RGK  NHKGR R FT  E+L+ + + +++K++WR+ +
Sbjct: 66  RGK-PNHKGRRRHFTDEEDLKMELEKEKRKEEWRERR 101



 Score = 31.5 bits (68), Expect = 0.56
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -2

Query: 253 EVENPNRVVXXXXXXXXXXXLGDVEKP-QLSXXXXXXXXXXXXXXAYQKLHAEGKTEQ 83
           E+ENPNRV+             D   P QLS               YQKL AEGKT+Q
Sbjct: 145 EIENPNRVLQKTKKVTEID---DAPAPAQLSRREKEEIAKQQAKLRYQKLQAEGKTDQ 199


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -3

Query: 426 ELEEQRKHDEQKKKWRKE 373
           ELEE+RK +E+K+K RK+
Sbjct: 145 ELEEKRKEEEEKEKQRKQ 162


>SB_11393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -3

Query: 459 KGRNRKFTS-----PEELEEQRKHDEQKKKWRKEQ 370
           KG  RK +S     PE++E  RK DE+K +  KE+
Sbjct: 4   KGLGRKVSSQCYYTPEDIERARKEDEEKAEKAKEE 38


>SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13)
          Length = 359

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 489 KMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRK 376
           +M R +  N + R RK     ++EE+R+ DEQ ++ R+
Sbjct: 247 EMERLQKENEEERLRKEKEERKMEEERRRDEQARRDRE 284


>SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 495 NHKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKE 373
           N K    K    K    K    EELEEQR  +EQ+ K +KE
Sbjct: 417 NRKTVEEKERKKKEEQEKIKREEELEEQRL-EEQRIKMQKE 456


>SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 99  KVKRSKRALTSLDSPSFANNAKKQLSAERQRK 4
           ++KR      S+DSP  +NN  ++L   +QR+
Sbjct: 712 EIKREPSPDRSIDSPEESNNESEELKKRKQRR 743


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,975,243
Number of Sequences: 59808
Number of extensions: 146312
Number of successful extensions: 554
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)