Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0525.Seq
         (614 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41745-1|AAC50462.1|  181|Homo sapiens PDGF associated protein p...    40   0.005
BC007873-1|AAH07873.1|  181|Homo sapiens PDGFA associated protei...    40   0.005
BC000684-1|AAH00684.1|  181|Homo sapiens PDGFA associated protei...    40   0.005
AC004922-1|AAF03506.1|  181|Homo sapiens unknown protein.              40   0.005
U65960-1|AAB07135.1|  171|Homo sapiens HASPP28 protein.                36   0.086
AF002163-1|AAC51761.1| 1153|Homo sapiens delta-adaptin protein.        29   9.9  
AC005545-3|AAC34212.1| 1121|Homo sapiens delta-adaptin, partial ...    29   9.9  

>U41745-1|AAC50462.1|  181|Homo sapiens PDGF associated protein
           protein.
          Length = 181

 Score = 40.3 bits (90), Expect = 0.005
 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = -3

Query: 486 MPRG-KFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 370
           MP+G +   HKGR R++TSPEE++ Q + ++QK +  +EQ
Sbjct: 1   MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKAREEEEQ 40


>BC007873-1|AAH07873.1|  181|Homo sapiens PDGFA associated protein 1
           protein.
          Length = 181

 Score = 40.3 bits (90), Expect = 0.005
 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = -3

Query: 486 MPRG-KFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 370
           MP+G +   HKGR R++TSPEE++ Q + ++QK +  +EQ
Sbjct: 1   MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKAREEEEQ 40


>BC000684-1|AAH00684.1|  181|Homo sapiens PDGFA associated protein 1
           protein.
          Length = 181

 Score = 40.3 bits (90), Expect = 0.005
 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = -3

Query: 486 MPRG-KFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 370
           MP+G +   HKGR R++TSPEE++ Q + ++QK +  +EQ
Sbjct: 1   MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKAREEEEQ 40


>AC004922-1|AAF03506.1|  181|Homo sapiens unknown protein.
          Length = 181

 Score = 40.3 bits (90), Expect = 0.005
 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = -3

Query: 486 MPRG-KFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 370
           MP+G +   HKGR R++TSPEE++ Q + ++QK +  +EQ
Sbjct: 1   MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKAREEEEQ 40


>U65960-1|AAB07135.1|  171|Homo sapiens HASPP28 protein.
          Length = 171

 Score = 36.3 bits (80), Expect = 0.086
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = -3

Query: 477 GKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 370
           G+   HKG  R++TSPEE++ Q + ++QK +  +EQ
Sbjct: 6   GRKGGHKGWARQYTSPEEIDTQLQSEKQKAREEEEQ 41


>AF002163-1|AAC51761.1| 1153|Homo sapiens delta-adaptin protein.
          Length = 1153

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 489 KMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 370
           K P+ K   HK + R     +E E+++    +KKK RKE+
Sbjct: 842 KKPKKKEKKHKEKERDKEKKKEKEKKKSPKPKKKKHRKEK 881


>AC005545-3|AAC34212.1| 1121|Homo sapiens delta-adaptin, partial CDS
           protein.
          Length = 1121

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 489 KMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 370
           K P+ K   HK + R     +E E+++    +KKK RKE+
Sbjct: 810 KKPKKKEKKHKEKERDKEKKKEKEKKKSPKPKKKKHRKEK 849


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,383,102
Number of Sequences: 237096
Number of extensions: 702856
Number of successful extensions: 1976
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1970
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)