Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0525.Seq
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical...    29   2.6  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical
           protein B0511.2 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = -3

Query: 582 VLHHFIFNNNFKSLQYLNILSLFKSITK*NHKMPRGKFTNHKG----RNRKFTSPEE--L 421
           V H+F F+ N K +QY  + +L    TK      + K  N+K      N+KF + E   +
Sbjct: 310 VFHNFFFDFNEKYIQYYVVAALEDFKTKFEIYANKKKLRNYKSDRSEGNQKFQAEEVKLM 369

Query: 420 EEQRKHDEQ 394
           EE  KH  +
Sbjct: 370 EEVGKHKSE 378


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
           protein ZK1067.2 protein.
          Length = 2219

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 477 GKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 370
           G  + H  R+ KF SP+  EE+RK+ E+    + +Q
Sbjct: 427 GTVSEHS-RDDKFVSPQNCEEKRKYCEEDTDAKPQQ 461


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,280,965
Number of Sequences: 27780
Number of extensions: 117953
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)