Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0525.Seq
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    25   0.44 
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    25   0.44 
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    25   0.44 
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    25   0.44 
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    25   0.44 
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    25   0.44 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    25   0.44 
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    25   0.44 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    25   0.78 
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    25   0.78 
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    25   0.78 
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    25   0.78 
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    25   0.78 
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    25   0.78 
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    25   0.78 
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    25   0.78 
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    25   0.78 
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    25   0.78 
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    25   0.78 
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    25   0.78 
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    25   0.78 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.1  

>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 564 FNNNFKSLQYLNILSL 517
           +N N+K LQY NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 564 FNNNFKSLQYLNILSL 517
           +N N+K LQY NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 564 FNNNFKSLQYLNILSL 517
           +N N+K LQY NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 564 FNNNFKSLQYLNILSL 517
           +N N+K LQY NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 564 FNNNFKSLQYLNILSL 517
           +N N+K LQY NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 564 FNNNFKSLQYLNILSL 517
           +N N+K LQY NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 564 FNNNFKSLQYLNILSL 517
           +N N+K LQY NI+++
Sbjct: 105 YNTNYKKLQYYNIINI 120


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 564 FNNNFKSLQYLNILSL 517
           +N N+K LQY NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 104 NNNYKKLQYYNI 115


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 104 NNNYKKLQYYNI 115


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 104 NNNYKKLQYYNI 115


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 104 NNNYKKLQYYNI 115


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 94  NNNYKKLQYYNI 105


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 94  NNNYKKLQYYNI 105


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 94  NNNYKKLQYYNI 105


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 94  NNNYKKLQYYNI 105


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 315 NNNYKKLQYYNI 326


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 326 NNNYKKLQYYNI 337


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 326 NNNYKKLQYYNI 337


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 315 NNNYKKLQYYNI 326


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 561 NNNFKSLQYLNI 526
           NNN+K LQY NI
Sbjct: 327 NNNYKKLQYYNI 338


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 555 NFKSLQYLNILSLFKSITK*NHKMPRGKFTNHKGRNRKFTSPEE 424
           + K++ ++    L K I +  H++ R     ++GR   F  PEE
Sbjct: 516 DIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEE 559


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,970
Number of Sequences: 438
Number of extensions: 1548
Number of successful extensions: 23
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)