Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0521.Seq
         (840 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and glutamine-r...    87   7e-16
UniRef50_Q57XI8 Cluster: Variant surface glycoprotein (VSG, atyp...    36   1.3  
UniRef50_Q57WM8 Cluster: Variant surface glycoprotein (VSG), put...    34   5.1  
UniRef50_Q5KGR8 Cluster: Cytoplasm protein, putative; n=2; Filob...    33   6.8  
UniRef50_Q2JF52 Cluster: Transcriptional regulator, TetR family;...    30   9.9  

>UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and
           glutamine-rich; n=4; Endopterygota|Rep: Splicing factor
           proline-and glutamine-rich - Bombyx mori (Silk moth)
          Length = 641

 Score = 86.6 bits (205), Expect = 7e-16
 Identities = 44/75 (58%), Positives = 44/75 (58%)
 Frame = +1

Query: 259 QQLMRHEEELSXXXXXXXXXXXXXXXXNTLFVQAQRLNSMLDRXXXXXXXXXXXXXXXYR 438
           QQLMRHEEELS                NTLFVQAQRLNSMLDR               YR
Sbjct: 547 QQLMRHEEELSQRMRLQDDELRRRQQENTLFVQAQRLNSMLDRQEQGMFDQQQPMDGGYR 606

Query: 439 DQYDMQCGSYDDMPP 483
           DQYDMQCGSYDDMPP
Sbjct: 607 DQYDMQCGSYDDMPP 621



 Score = 48.0 bits (109), Expect = 3e-04
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +3

Query: 486 RGWDGPSPLDDYPNKRRRF 542
           RGWDGP PLDDYPNKRRRF
Sbjct: 623 RGWDGPRPLDDYPNKRRRF 641



 Score = 38.7 bits (86), Expect = 0.18
 Identities = 19/41 (46%), Positives = 19/41 (46%)
 Frame = +2

Query: 17  HERPRGWKQLHELHRQXXXXXXXXXXXXXXXXXXQMEYAKY 139
           HE    WKQLHELHRQ                  QMEYAKY
Sbjct: 466 HEYGTRWKQLHELHRQKEEALKKELAAEEEKLEAQMEYAKY 506


>UniRef50_Q57XI8 Cluster: Variant surface glycoprotein (VSG,
           atypical), putative; n=1; Trypanosoma brucei|Rep:
           Variant surface glycoprotein (VSG, atypical), putative -
           Trypanosoma brucei
          Length = 525

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 23/74 (31%), Positives = 27/74 (36%)
 Frame = +2

Query: 389 KNKECLINSSXWMEATETSTTCSAGVMTTCRQPRLGWTFAIG*LP**TSSFLNKHKYITH 568
           K+KEC  N   W    ET+ TC         Q     T         TS    KHK  T 
Sbjct: 413 KSKECTENGCKWKGTDETTGTCDVDETKVTSQTNAAGTGEASNEETATSG-CAKHKDKTE 471

Query: 569 CDDKKRTSSNQCAY 610
           CD  K+     CA+
Sbjct: 472 CDADKKDDKQNCAF 485


>UniRef50_Q57WM8 Cluster: Variant surface glycoprotein (VSG),
           putative; n=1; Trypanosoma brucei|Rep: Variant surface
           glycoprotein (VSG), putative - Trypanosoma brucei
          Length = 531

 Score = 33.9 bits (74), Expect = 5.1
 Identities = 24/94 (25%), Positives = 34/94 (36%)
 Frame = +2

Query: 389 KNKECLINSSXWMEATETSTTCSAGVMTTCRQPRLGWTFAIG*LP**TSSFLNKHKYITH 568
           K+KEC  N   W    E + TC         Q   G T   G      ++   KHK    
Sbjct: 418 KSKECTDNGCKWKGTDEKTGTCEVDESKVTTQTNTGGTGGDGAPGAAATTGCAKHKNQPD 477

Query: 569 CDDKKRTSSNQCAYYFCIKSFVSSNKGVCXXESF 670
           C+ +K      CA+     +    +K +C   SF
Sbjct: 478 CEKEKIGEKQNCAWRKGKDNEPDQDKEMCRNGSF 511


>UniRef50_Q5KGR8 Cluster: Cytoplasm protein, putative; n=2;
            Filobasidiella neoformans|Rep: Cytoplasm protein,
            putative - Cryptococcus neoformans (Filobasidiella
            neoformans)
          Length = 1514

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = +3

Query: 360  PEIELYAGSSRTRNV*STAANGWRLQRPVRHAVREL*RHAASRGWDGPSPLDDYPNKRRR 539
            PEI L    ++T    +TA +   LQ P      EL R A       PSP+DD    RR 
Sbjct: 1433 PEIHLIENVTQTPTTVTTACDDSNLQSPEHAEYLELDRVAKEPCVSSPSPIDDAWEARRS 1492

Query: 540  F 542
            F
Sbjct: 1493 F 1493


>UniRef50_Q2JF52 Cluster: Transcriptional regulator, TetR family;
           n=3; Frankia|Rep: Transcriptional regulator, TetR family
           - Frankia sp. (strain CcI3)
          Length = 383

 Score = 30.3 bits (65), Expect(2) = 9.9
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 351 RAGPEIELYAGSSRTRNV*STAANGWRLQRPVRHAVREL*RHAASR 488
           RA   +    G+SR+    S   +G R   P R A R L RH   R
Sbjct: 46  RAAEPVRTVVGTSRSMRAGSDRTSGHRPDTPARRAFRHLLRHRTGR 91



 Score = 21.4 bits (43), Expect(2) = 9.9
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +3

Query: 471 RHAASRGWDG--PSPLDDYPNKRRRF*TNINTSHIAMTKSARLPISAH 608
           RH +  G     PSP D     + R+ T    S +   + ARL   AH
Sbjct: 110 RHDSGTGRSALSPSPADKSGTTQFRYRTVPEPSPVGYARRARLAPRAH 157


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,013,586
Number of Sequences: 1657284
Number of extensions: 7199455
Number of successful extensions: 15605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15599
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)