Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0521.Seq
         (840 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   9.2  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   9.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.2  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 588 RLPISAHITFVSSLL 632
           + PISAH +F+S  L
Sbjct: 66  QFPISAHFSFMSRFL 80


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 588 RLPISAHITFVSSLL 632
           + PISAH +F+S  L
Sbjct: 22  QFPISAHFSFMSRFL 36


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 551 VCLETTTFIRVIIQWRRSIP 492
           +C      I + +QW RSIP
Sbjct: 199 ICESAAQLIFMNVQWVRSIP 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,037
Number of Sequences: 336
Number of extensions: 1888
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)