Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0521.Seq
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512...    28   8.1  

>10_08_0850 +
           21050164-21050189,21050874-21050979,21051186-21051257,
           21051775-21051828,21052077-21052184,21052653-21052802,
           21052914-21053258,21053361-21054801,21054844-21055675,
           21057060-21057325,21057530-21059603,21060172-21060442,
           21060556-21060990
          Length = 2059

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 380 WIVKNKECLINSSXWMEATETSTTCS 457
           WI +   CL +S  WM A E S  CS
Sbjct: 473 WIKEVSPCLRSSLMWMGAVELSLVCS 498


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,011
Number of Sequences: 37544
Number of extensions: 208176
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)