Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0521.Seq
         (840 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U31961-18|AAA84417.1|  642|Drosophila melanogaster protein ( Dro...    29   6.0  
AY119141-1|AAM51001.1|  411|Drosophila melanogaster RE44625p pro...    29   6.0  
AE014297-2248|AAF55347.1|  630|Drosophila melanogaster CG10328-P...    29   6.0  

>U31961-18|AAA84417.1|  642|Drosophila melanogaster protein (
           Drosophila melanogasterbithorax complex (BX-C), complete
           sequence. ).
          Length = 642

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 17  HERPRGWKQLHELHRQXXXXXXXXXXXXXXXXXXQMEYAKY 139
           HE    WKQLH+L +                   QMEYA+Y
Sbjct: 468 HEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARY 508


>AY119141-1|AAM51001.1|  411|Drosophila melanogaster RE44625p
           protein.
          Length = 411

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 17  HERPRGWKQLHELHRQXXXXXXXXXXXXXXXXXXQMEYAKY 139
           HE    WKQLH+L +                   QMEYA+Y
Sbjct: 237 HEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARY 277


>AE014297-2248|AAF55347.1|  630|Drosophila melanogaster CG10328-PA
           protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 17  HERPRGWKQLHELHRQXXXXXXXXXXXXXXXXXXQMEYAKY 139
           HE    WKQLH+L +                   QMEYA+Y
Sbjct: 456 HEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARY 496


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,201,683
Number of Sequences: 53049
Number of extensions: 343985
Number of successful extensions: 810
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)