Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0521.Seq
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34360.1 68415.m04207 MATE efflux family protein similar to r...    28   6.7  
At1g73700.1 68414.m08534 MATE efflux family protein similar to r...    28   8.9  

>At2g34360.1 68415.m04207 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 466

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 569 NV*CIYVCLETTTFIRVIIQWRRSIPTAAGGMSS*LPHCMSYW 441
           NV  + +C   TT + VII W   + +  G   + + + +SYW
Sbjct: 176 NVIPVVICSGVTTSLHVIICWVLVLKSGLGFRGAAVANAISYW 218


>At1g73700.1 68414.m08534 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 569 NV*CIYVCLETTTFIRVIIQWRRSIPTAAGGMSS*LPHCMSYW 441
           NV  ++VC   TT + +++ W   + T  G   + L   +SYW
Sbjct: 173 NVFPVFVCSGITTCLHLLLCWLFVLKTGLGYRGAALAISVSYW 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,118,858
Number of Sequences: 28952
Number of extensions: 161177
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)