Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0519.Seq
         (880 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   7.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   7.3  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.7  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    21   9.7  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    21   9.7  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 596 TTEGHCSTVLRLNSSQVAEVS 658
           TTEG C  V+R   S + +++
Sbjct: 46  TTEGDCRDVVRCTKSGLKQIT 66


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -2

Query: 411 YGPRRSYPGYQKQLPFPEHPVHHGSVS 331
           YG    +PG   Q P     VHH   S
Sbjct: 114 YGSDLYFPGATSQPPTDNSHVHHHQTS 140


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -2

Query: 447 WRPDLGNRIYRWY 409
           WR D+G  ++ W+
Sbjct: 197 WREDIGLNLHHWH 209


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 722 AAKYGYDISGPATNAQEAIQWN 657
           AA YG   +GP T A   I +N
Sbjct: 281 AATYGGSEAGPYTRAMGVIGYN 302


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 722 AAKYGYDISGPATNAQEAIQWN 657
           AA YG   +GP T A   I +N
Sbjct: 281 AATYGGSEAGPYTRAMGVIGYN 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,710
Number of Sequences: 336
Number of extensions: 5154
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)