Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0519.Seq
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0532 - 3935661-3935720,3936314-3936412,3937804-3937908,393...    30   2.1  
08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034     30   2.8  
03_05_0131 - 21107865-21108085,21108517-21108766,21110310-211105...    29   4.9  
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386...    29   6.5  
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188...    29   6.5  
04_04_0296 + 24216284-24216428,24216631-24216745,24217321-242174...    29   6.5  

>07_01_0532 -
           3935661-3935720,3936314-3936412,3937804-3937908,
           3939474-3939666,3940434-3940513,3940607-3940904,
           3941139-3941431
          Length = 375

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 517 VDHWS*NCVWFASCVLRNTMNCSLATRSGQPNLS 416
           + HWS NC+   SC+L  T + SLA  +   + S
Sbjct: 131 IGHWSPNCLLEESCILEMTPSVSLAGETASTSSS 164


>08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034
          Length = 760

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
 Frame = -2

Query: 291 AELQEIRR*SVHHTSSLQYENDDLMRPDFNNDDYAIACCVS-PMIVGKQMQFFGARANLA 115
           AE  EI           + E D     DF ND+       + P+    +  F G R NL+
Sbjct: 556 AEENEINYNEEAEDEESETEEDYWSEFDFENDEVMFPVARNNPVYFRGEFYFLGQRGNLS 615

Query: 114 KTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVME 1
                  N G +E    ++  K EPI+ D+  YDE  E
Sbjct: 616 -----VFNPGNNE---WRILDKPEPIRADLTPYDEGKE 645


>03_05_0131 -
           21107865-21108085,21108517-21108766,21110310-21110549,
           21111104-21111234,21114107-21114365
          Length = 366

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 159 VGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIK 34
           +GKQ+   GA+A+LAK++     GG D    + + P SE ++
Sbjct: 151 LGKQLGIPGAKAHLAKSLFVVAIGGNDIINDLLLSPVSELLR 192


>11_06_0607 +
           25437897-25438046,25438180-25438236,25438522-25438602,
           25438720-25438777,25438888-25438991,25439064-25439115,
           25439232-25439281,25440279-25440443,25440531-25440603,
           25440714-25440846,25441146-25441203,25441411-25441458,
           25441593-25441676,25441803-25441868,25442419-25442502
          Length = 420

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 394 RPSRPIPPIDSVAQIGSPENSSSYSGVRRKRTIRSFMTSGQPFPALLVR 540
           R  RP  P  S A    P N+S +SG RR+R + S        P L+ +
Sbjct: 9   RAPRPRVPAVSAAARSLPPNTSFFSGGRRRRRLLSSSVVCMAEPYLIAK 57


>05_04_0331 +
           20317482-20318174,20318518-20318685,20318773-20318895,
           20319094-20319165,20321217-20321431,20321521-20321593,
           20322092-20322568,20322970-20323077,20323184-20323192,
           20323193-20323552
          Length = 765

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 354 GVQETEAVFGNQGTTVEAHTTDRFGCPDRVA 446
           G Q++EAV G QG+T+     D  G  D  A
Sbjct: 149 GAQDSEAVGGAQGSTIAGDQADARGAQDSTA 179


>04_04_0296 +
           24216284-24216428,24216631-24216745,24217321-24217411,
           24217495-24217640,24217745-24217964,24218037-24218145,
           24218273-24218441,24218546-24218720
          Length = 389

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -1

Query: 679 LRKLSSGTYFGYLAAVKSQNGAAMS--FGRTSTFLDVYIERDLKAGKI 542
           +R++ +  Y  +L + KS    AM+  FG T  F+D+ + R + AGK+
Sbjct: 296 MREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKL 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,470,695
Number of Sequences: 37544
Number of extensions: 628162
Number of successful extensions: 1721
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)