Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0519.Seq
(880 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5) 35 0.075
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_20395| Best HMM Match : Extensin_2 (HMM E-Value=0.019) 30 2.1
SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004) 30 2.1
SB_25079| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4) 29 3.7
SB_14370| Best HMM Match : MyTH4 (HMM E-Value=9.3e-25) 29 6.6
SB_39408| Best HMM Match : Cadherin (HMM E-Value=0) 29 6.6
SB_12195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_10136| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_41306| Best HMM Match : Ribosomal_L19e (HMM E-Value=8.5) 28 8.7
>SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)
Length = 520
Score = 35.1 bits (77), Expect = 0.075
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = -1
Query: 556 KAGKITEQEAQEMVDHWS*NCVWFASCVLRNTMNCSLATRSGQPNLSVVWASTVVPWLPK 377
++GK QE + W C A+C T S + +G+ +L+ + L
Sbjct: 152 RSGKSYTQEPNRLASSWRSCCATAAACTPLTTQETSRGSSTGRRSLAAAMHADPTTILAN 211
Query: 376 TASVS*TPCTPWVRLRN 326
T SV CT W+R N
Sbjct: 212 TNSVGKHVCT-WIRTSN 227
>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 31.5 bits (68), Expect = 0.93
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +3
Query: 441 VAREQFIVFRSTQEANHTQFHDQWSTISCASCSVILP 551
V ++ +V+ + +H + HD + I+C+S ++LP
Sbjct: 175 VLQDHMLVYTTRSSRSHVRLHDSFFKITCSSTQLVLP 211
Score = 29.5 bits (63), Expect = 3.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 441 VAREQFIVFRSTQEANHTQFHDQWSTISCASCSVILP 551
V + V+ + +H + HD + I+C+S ++LP
Sbjct: 243 VLPDHMFVYTTRSSRSHVRLHDSFFKITCSSTKLVLP 279
>SB_20395| Best HMM Match : Extensin_2 (HMM E-Value=0.019)
Length = 348
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 388 RVRPSRPIPPIDSVAQIGSPENSSSYSGVRRKRTIR-SFMTSGQP 519
R P P PP+DS A+ G P +S+ R +R I+ S +T +P
Sbjct: 155 RSPPPEPYPPVDS-AKAGPPVDSARARSPRGRRLIKISLLTEPEP 198
>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
Length = 610
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -2
Query: 438 DLGNRIYRWYGPRRSYPGYQKQLPFPEHPVHHGSVSGTEHDHSVV*KTA 292
DL I ++ PRR YP + + P P PV H G H +S +TA
Sbjct: 150 DLIELILQYSQPRR-YPDFPRGTPHPPPPVTHDQRQGGTHPNSNSGQTA 197
>SB_25079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 409 IPPIDSVAQIGSPENSSSYSGVRRKRTIRSFMTSG 513
+PP+D A +G E S + SGV T R+ +G
Sbjct: 55 VPPLDCAAPLGMTERSIADSGVTASTTARNLRFTG 89
>SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)
Length = 992
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 324 RFRRRTHGVQGVQETEAVF--GNQGTTVE-AHTTDRFGCPDRVAREQFIVFRSTQEANHT 494
R RRR G + E V G GT +E +TDR DRVA E + S + H
Sbjct: 364 RLRRRRFGTEIRLPYERVSYRGCCGTAIERGSSTDRGHSADRVASEACHPYTSGRVGQHL 423
Query: 495 QFHDQWST 518
+ ++ W T
Sbjct: 424 EQNEGWIT 431
>SB_14370| Best HMM Match : MyTH4 (HMM E-Value=9.3e-25)
Length = 618
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 22 QDIAFDR-FRLRTNLHFQFFVNAAVDCVQHGFRQV 123
+++AF R F +RT +FQ F+ +V+C R+V
Sbjct: 103 ENLAFHRIFLIRTTSYFQVFLRESVECALEEAREV 137
>SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2389
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 414 WYGPRRSYPGYQKQLP 367
WYG Y GY KQLP
Sbjct: 714 WYGTEAGYGGYNKQLP 729
>SB_12195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -1
Query: 664 SGTYFGYLAAVKSQNGAAMSFGRTS--TFLDVYIERDLKA 551
SG+YFG+ VK G++ S S + DV ++R LK+
Sbjct: 80 SGSYFGFYGGVKKAWGSSESTSSNSLLSIFDVDVDRALKS 119
>SB_10136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 441 VAREQFIVFRSTQEANHT--QFHDQWSTIS--CASCSVILPAFRSRSMYTSRKVEVRPKD 608
+A +FI FR + A+ QF T S S ++ AF+ R + T++ EV+ D
Sbjct: 163 LALRRFITFRDKETADKAIEQFSGFQFTNSHGLTSTLALVKAFKRRLLITTKASEVKEAD 222
Query: 609 IAAPF 623
A+P+
Sbjct: 223 KASPY 227
>SB_41306| Best HMM Match : Ribosomal_L19e (HMM E-Value=8.5)
Length = 220
Score = 28.3 bits (60), Expect = 8.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 133 CACKPGENHAVRNQR 89
CAC+PG +HA+R+ R
Sbjct: 112 CACRPGGSHAMRSMR 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,707,828
Number of Sequences: 59808
Number of extensions: 706766
Number of successful extensions: 2483
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2476
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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