Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0519.Seq
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek (dictyo...    30   1.9  
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos...    30   1.9  
Z83221-5|CAB05706.2|  578|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.      28   7.7  
AC024785-2|AAF60599.2|  467|Caenorhabditis elegans C-type lectin...    28   7.7  

>AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform b protein.
          Length = 849

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +1

Query: 241 QRRGVMDTLAANFLKFSGSFSDHRMVMFGSGDGPMVYRVFRKRKLFLVTRVRPSRPIPPI 420
           QR+  M+ +  + LK   +F D    +FG G   ++    +K  + + +   PSR   P 
Sbjct: 643 QRKTGMEPMFPSLLKRKNAFDDDEAPVFGGGSAAVINNTEKKIVIKVNSDRSPSRTPSPA 702

Query: 421 DSVAQIGSP 447
            S     SP
Sbjct: 703 SSPRASSSP 711


>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
            (dictyostelium suppressorof mek null) homolog protein 1,
            isoform a protein.
          Length = 1085

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +1

Query: 241  QRRGVMDTLAANFLKFSGSFSDHRMVMFGSGDGPMVYRVFRKRKLFLVTRVRPSRPIPPI 420
            QR+  M+ +  + LK   +F D    +FG G   ++    +K  + + +   PSR   P 
Sbjct: 879  QRKTGMEPMFPSLLKRKNAFDDDEAPVFGGGSAAVINNTEKKIVIKVNSDRSPSRTPSPA 938

Query: 421  DSVAQIGSP 447
             S     SP
Sbjct: 939  SSPRASSSP 947


>Z83221-5|CAB05706.2|  578|Caenorhabditis elegans Hypothetical
           protein C49A1.9 protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 340 PMVYRVFRKRKLFLVTRVRP-SRPIPPIDSVAQIGSPENSSSYSGVRRKRTIRSFMTSGQ 516
           P+ YR+F++ K F    V   ++ I  +DSVA+  + E S+  SG++           GQ
Sbjct: 157 PVGYRLFKRPKGFWCIGVTSVNQCITQVDSVAKCKASEPSAILSGLQSMEETNYVYGIGQ 216

Query: 517 P 519
           P
Sbjct: 217 P 217


>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 464 YDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYT 345
           YD   S +PI   E  GGMG + R L   N  R ++T +T
Sbjct: 198 YDPRASMEPIQTLEGHGGMGREARVLFAGN--RLISTGFT 235


>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 464 YDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYT 345
           YD   S +PI   E  GGMG + R L   N  R ++T +T
Sbjct: 198 YDPRASMEPIQTLEGHGGMGREARVLFAGN--RLISTGFT 235


>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
          Length = 1057

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 464 YDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYT 345
           YD   S +PI   E  GGMG + R L   N  R ++T +T
Sbjct: 198 YDPRASMEPIQTLEGHGGMGREARVLFAGN--RLISTGFT 235


>AC024785-2|AAF60599.2|  467|Caenorhabditis elegans C-type lectin
           protein 71 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
 Frame = +1

Query: 109 GFRQVCTRTEELHLFTNDHRAYAASNSVVIVVEVR------THQVIVLILQRRGVMDTLA 270
           GF++  T ++ L +  N +   +A  SVV+V+  R        + +  + Q  G+++ LA
Sbjct: 243 GFQESTTGSDVLDVINNFYNNSSACASVVMVLSKRYPNTPDISRTVAKVRQYHGIVNFLA 302

Query: 271 ANFLKFSGSFSDHRMVMFGSGDGPMVYR---VFRKRKLFLVTRVR 396
           +N + F GS S     +    +G        +F KR L++  R R
Sbjct: 303 SN-VPFGGSQSQVLFDLASQTNGLYGIEQDSLFSKRILYMPLRTR 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,721,063
Number of Sequences: 27780
Number of extensions: 501698
Number of successful extensions: 1485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)