Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0518.Seq
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.2  
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    29   3.9  
12_01_0861 + 8153108-8153266,8154633-8155136                           29   5.2  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 336 ITIHWPSFYNVV-TGKTLALPNLIALQH 416
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_01_0515 +
           4003167-4003229,4003318-4003738,4004224-4004367,
           4004474-4004556,4004661-4004775,4005309-4005400,
           4005558-4005612,4005689-4005834,4005888-4006001,
           4006149-4006342,4006985-4007112,4008526-4008583,
           4009800-4009876,4010214-4010263,4010336-4010515,
           4010633-4010731,4010816-4011133,4011221-4011281,
           4011693-4012781,4012951-4013005,4013133-4013291,
           4013923-4014442
          Length = 1406

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 10/43 (23%)
 Frame = -3

Query: 261 RGP*ESRIVIFRHYLPCREWVICA----------PAAFLGCGS 163
           + P +SR++IF HY  C + ++C+          PAAF+G  S
Sbjct: 520 KNPKDSRVIIFAHYRECVKEILCSLRNIDGELVRPAAFIGQSS 562


>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 260 EARKSPVSLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 90
           + R +P SL    +     G   RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 89  QLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,501,646
Number of Sequences: 37544
Number of extensions: 574117
Number of successful extensions: 1356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)