Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0518.Seq
         (914 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disea...    33   1.4  
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    33   1.9  
AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.     31   7.7  

>AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disease
           1-like 3 protein.
          Length = 1732

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 37/128 (28%), Positives = 48/128 (37%)
 Frame = -1

Query: 470 KGDRCGPLRYYASWRKGDVLQGD*VG*RQGFPSHDVVKRRPVNCNTTHYRANWVPGPPSL 291
           KGD+C  L+YY   + GD L GD    R G  SH   + +         R    PGP  L
Sbjct: 125 KGDKC-LLKYYFICQTGDFLDGDAHYERNGNNSHLYQRHKKTKRGVAIARDKMPPGPGHL 183

Query: 290 KYLKCTHSDYEARKSPVSLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPV 111
               C H    A  S      ++        F  +L S+     S A  P S P   +  
Sbjct: 184 P-TTC-HYPLPAHLSKTLCHPISQ-------FPSVLSSITSQVTSAASEPSSQPLPVITQ 234

Query: 110 TTMVVAET 87
            TM V+ T
Sbjct: 235 LTMPVSVT 242


>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
            marker CA125 protein.
          Length = 22152

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -1

Query: 251  KSPVSLFFVTT---SRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVA 93
            ++P  + ++TT       SG F+ + PS+   +   + SPES P SPLPVT ++ +
Sbjct: 5614 RTPGDVSWMTTPPVEETSSG-FSLMSPSMTSPSPVSSTSPESIPSSPLPVTALLTS 5668


>AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.
          Length = 1857

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 333  RITIHWP-SFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPN 476
            R+   WP S    +TGK  A  +L+  +    +P G   K P P+A PN
Sbjct: 1749 RVRGWWPFSKSKELTGKVEAEFHLVTAEEAEKNPVGKARKEPEPLAKPN 1797


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,471,051
Number of Sequences: 237096
Number of extensions: 3197302
Number of successful extensions: 10118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10118
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)