Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0518.Seq
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 19/80 (23%), Positives = 29/80 (36%)
 Frame = -1

Query: 254 RKSPVSLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 75
           R S  +    TTS  GSG          V  V  + S   N D+ L +   +   ++++ 
Sbjct: 222 RPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQP 281

Query: 74  **GRHLKDASPVLDHAICKS 15
               H    S  L  + C S
Sbjct: 282 SLASHHSHLSSALGRSACHS 301


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 374 SHDVVKRRPVNCNTTHYRANWVPGP 300
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 180  RQQARKLPTPGTGGSDE 230
            R+Q RK  TPG   SDE
Sbjct: 1768 RRQQRKQQTPGDVESDE 1784


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 180  RQQARKLPTPGTGGSDE 230
            R+Q RK  TPG   SDE
Sbjct: 1764 RRQQRKQQTPGDVESDE 1780


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,403
Number of Sequences: 438
Number of extensions: 5451
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)