Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0518.Seq
         (914 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66850.1 68418.m08428 protein kinase family protein contains ...    34   0.15 
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   5.7  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   5.7  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   9.9  
At1g69870.1 68414.m08041 proton-dependent oligopeptide transport...    28   9.9  

>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +2

Query: 143 EREPEKRLPHPRKAAGAQITHSRHG--R**RKITIRDSY---GPRNRNEYTLNILTRGGP 307
           +R+PE RL   R ++G  +T    G  R  RK T   SY    PRNRN Y +NI T   P
Sbjct: 129 DRDPE-RLISDRTSSGPPLTSVNGGFARDSRKATENSSYQDFSPRNRNGYWVNIPTMSAP 187


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 191 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 90
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 182 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 75
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 321 PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 485
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCA 630


>At1g69870.1 68414.m08041 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 620

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -2

Query: 619 SVYSFDL*GILPISAYWLKNELI*QKFNANFNKILTLQFAIRHSXAQLLGRAIGAGLFAI 440
           S+ + D  G+ P+S +WL  +LI       FN I  ++F        +  R+I   LF++
Sbjct: 471 SINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHM--RSIANSLFSL 528

Query: 439 TPAG 428
           + AG
Sbjct: 529 SFAG 532


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,749,483
Number of Sequences: 28952
Number of extensions: 428099
Number of successful extensions: 872
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)