Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0517.Seq
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ...    27   3.5  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    27   4.6  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    26   8.0  

>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -1

Query: 260 KSSQIIFLDCCHTL*QFTERKIPEAASSTTMVADGGST-NMSDECLRSQNVSRAAIRVDT 84
           K  Q I+L+   ++    + K+ E      ++AD     + SDE L+  +    A+ V  
Sbjct: 24  KKCQRIYLEAYTSILLVQKEKLEELYGKEVILADREMVESSSDEILKDADNCDVAMLVVG 83

Query: 83  APVAAATHA 57
            P+ A THA
Sbjct: 84  DPMGATTHA 92


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 805 NVGLPRSKGAKKPSXQGDWPI 867
           N GLP SKG + PS +G  P+
Sbjct: 187 NSGLPFSKGFRSPSYKGHAPV 207


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -1

Query: 197 IPEAASSTTMVADGGSTNMSDECLRSQNVSRAAIRVDTAPVAAATHALPPLADTNTRAHI 18
           +P    S T + DG +  +S++  RSQ  +        +  AAA H L      N   H+
Sbjct: 213 LPIPTGSLTKI-DGLNNQLSNDLTRSQTTNIFGFAEKASSFAAAVHKLNEARIRNQACHV 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,079
Number of Sequences: 5004
Number of extensions: 51501
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)