Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0517.Seq
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1068 - 11052769-11052943,11053103-11053182,11053304-110534...    32   0.52 
09_03_0172 - 13072575-13073800,13075919-13076054                       31   0.91 
04_01_0502 - 6587068-6587964                                           31   1.6  
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186...    30   2.8  

>12_01_1068 -
           11052769-11052943,11053103-11053182,11053304-11053401,
           11053487-11053627,11053701-11053841,11053933-11054017,
           11055296-11055826,11055926-11055940
          Length = 421

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -1

Query: 191 EAASSTTMVADGGSTNMSDECLRSQNVSRAAIRVDTAPVAAATHALPPLADTNTRA 24
           E +SS++    G S   +++ + S + SR A  V +AP A    + PPL    TR+
Sbjct: 94  EYSSSSSYRRRGASAPPAEDVVVSSSYSRPAAAVASAPQACTVSSAPPLRAVETRS 149


>09_03_0172 - 13072575-13073800,13075919-13076054
          Length = 453

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +1

Query: 712 NRQNPLLNPKDLTEIXGXXCSSLEQESXXLKNVGLPRSKGAKKPSXQGDWPI 867
           NR+N +L  KDLT + G  C+ L +E   +    LP       P      PI
Sbjct: 279 NRRNVILTMKDLTAVGGRFCTYLSKEKAIVTLEFLPNPTFTTTPVKDASDPI 330


>04_01_0502 - 6587068-6587964
          Length = 298

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 143 MSDECLRSQNVSRAAIRVDTAPVAAATH 60
           MSDECLR   +S    R++TAP     H
Sbjct: 124 MSDECLREAELSSEVTRINTAPRVLPCH 151


>06_03_0927 + 26015956-26018230,26018323-26018471,26018550-26018618,
            26018701-26018853,26018927-26019090,26019207-26019354,
            26020348-26020470,26020560-26020647,26020781-26020950
          Length = 1112

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 505  WETLALPNLIALQHIPLSPAGVIAXRPXPXALPNSCAPEWR 627
            WE L      A  H  +   G+++    P A+P+SC PEWR
Sbjct: 1038 WELLTGEEPYADLHYGVIIGGIVSNTLRP-AVPDSCDPEWR 1077


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,096,429
Number of Sequences: 37544
Number of extensions: 354358
Number of successful extensions: 778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)