Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0516.Seq
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    48   2e-06
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    33   0.061
SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr ...    29   0.75 
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    29   0.99 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   4.0  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   7.0  

>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
 Frame = +3

Query: 3   LGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSF-AGREELSAFLSQCRVLINLLPN 179
           +G G +G   AQ +      +   +R R      +   A        LS   V+    P 
Sbjct: 165 IGMGAIGKSFAQKILPLGCEIVYHNRNRLEAEEEKRLGASFVSFDELLSSSDVISINCPL 224

Query: 180 TPETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREPLPP 359
           TP T  +I+ +  EK+ DG Y++N     ++ +    +   +GKV  A LDVF  EP P 
Sbjct: 225 TPATHDLISTKEFEKMKDGVYIINTARGAIINEDAFIKAIKSGKVARAGLDVFLNEPTP- 283

Query: 360 ESPLW-QHPRVTITPHVAAIT 419
            +  W +  +VTI PH    T
Sbjct: 284 -NKFWLECDKVTIQPHCGVYT 303


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 33.1 bits (72), Expect = 0.061
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
 Frame = +3

Query: 171 LPNTPETVGIINQQLLEKLPDGAYLLNL---RVVFMLWKMTCSRRWIAGKVKGAMLDVFN 341
           +P +PET  +I+ +    + +G+YL+N     VV +   +  S+   +GK+ GA +DV+ 
Sbjct: 255 VPASPETKNMISSKEFAAMKEGSYLINASRGTVVDIPALVDASK---SGKIAGAAIDVYP 311

Query: 342 REP 350
            EP
Sbjct: 312 SEP 314


>SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 184

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +3

Query: 126 ELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIA 305
           +L  FL+ C    +   NTP  V +  +  + +LP+GA +LNL   F      CS+  + 
Sbjct: 26  DLEKFLNLCEGSCSQC-NTPFCVDVGPRNAIIQLPNGADVLNLNPNFQAIFECCSKNSLT 84

Query: 306 G 308
           G
Sbjct: 85  G 85


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 125 FPSGKALHARPRFTGSTPATQRKAPGLQTLSNFTAQYA 12
           +P G+ L+  P  T S  +T   AP  +  S  TA+Y+
Sbjct: 243 YPDGRGLYQNPDGTFSPGSTDHPAPSPEEWSTITAKYS 280


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 566 RVMYPVDLHMHTVASTHAYSTLSDYIAQAKXKGI 667
           R+ YP+D H H +A T+    + ++ ++ K   +
Sbjct: 819 RLHYPLDPHSHPIAKTYRILNIIEFTSKRKCMSV 852


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 381  PRVTITPHVAAITRPAEAVEYISRTIAQLEKGERVAGKSTAQRLLIKHQD 530
            PR+++  HV  ITR    VE +    +Q    + ++G S A  +L++  D
Sbjct: 1220 PRLSVEAHVQPITRSLVRVELVIN--SQFNWDDHLSGTSEAFWILVEDVD 1267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,817,043
Number of Sequences: 5004
Number of extensions: 78785
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)