Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0516.Seq
(976 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1064 + 9385330-9385432,9386181-9386236,9386938-9387082,938... 66 3e-11
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 59 6e-09
08_02_0846 - 21811156-21811833,21811960-21812055,21812157-218122... 56 3e-08
01_01_0902 - 7099260-7099778,7100291-7100704,7101579-7102010 56 3e-08
04_01_0036 + 436592-437572 54 1e-07
06_03_0085 + 16431503-16431568,16431981-16432152,16432402-164324... 54 2e-07
06_03_0086 + 16458881-16458952,16461795-16461966,16462621-164628... 52 5e-07
04_01_0038 + 446314-446787,446829-447350 49 6e-06
04_01_0035 - 433848-434372,434905-435381 46 6e-05
06_03_0975 - 26471438-26472109,26472189-26472284,26472372-264724... 44 1e-04
07_01_1060 + 9330217-9330219,9330490-9330561,9330773-9330917,933... 38 0.012
03_03_0134 + 14732622-14732830,14733202-14733316,14733429-147336... 31 1.4
03_01_0183 - 1474202-1474276,1474511-1474627,1474791-1474847,147... 31 1.4
06_01_0251 - 1890143-1891180 31 1.8
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560... 30 3.2
05_01_0137 + 917533-917814,918080-918352 29 4.2
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 29 4.2
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 29 7.4
03_06_0277 + 32814621-32814996,32815419-32815558,32816074-32816160 29 7.4
>07_01_1064 +
9385330-9385432,9386181-9386236,9386938-9387082,
9387126-9387298,9388058-9388129,9388222-9388336,
9388418-9388521,9388604-9388645,9388932-9389144,
9389621-9389689
Length = 363
Score = 66.5 bits (155), Expect = 3e-11
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Frame = +3
Query: 3 LGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPG----------VQSFAGREELSAFLSQC 152
LG G +G ++A+ L+ + + T+++W V G E++ F +
Sbjct: 187 LGFGAIGVEIAKRLRPFGVKILA---TKRNWSSDTLPCDIDELVDKKGGPEDMYEFAGEA 243
Query: 153 RVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLD 332
++I L T ETVGI++ + L + G+YL+N+ +L +G + G +D
Sbjct: 244 DIVITCLLLTNETVGIVDHKFLSAMKKGSYLVNIARGRLLDYDAVFNHLKSGHLGGLGID 303
Query: 333 VFNREPLPPESPLWQHPRVTITPHVAAITRPAEAVEYISRTIAQLEKG 476
V EP PE P+ + V ITPH+A +T EY RT+A++ G
Sbjct: 304 VAWTEPYDPEDPILKFSNVIITPHIAGVT------EYSYRTMAKVVGG 345
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 58.8 bits (136), Expect = 6e-09
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Frame = +3
Query: 171 LPNTPETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREP 350
+P TP T ++N + K+ G ++N+ ++ + R +G V A LDVF +EP
Sbjct: 272 MPLTPATNKMLNDETFAKMKKGVRIINVARGGVIDEDALVRALDSGIVAQAALDVFTKEP 331
Query: 351 LPPESPLWQHPRVTITPHVAAITRPAE---AVEYISRTIAQLEKGERVAGKSTA 503
P+S L H VT+TPH+ A T A+ A+E I L KGE A A
Sbjct: 332 PAPDSKLVLHENVTVTPHLGASTVEAQEGVAIEIAEAVIGAL-KGELAASAVNA 384
>08_02_0846 -
21811156-21811833,21811960-21812055,21812157-21812267,
21812367-21812743,21814699-21814734,21815236-21815839
Length = 633
Score = 56.4 bits (130), Expect = 3e-08
Identities = 34/102 (33%), Positives = 53/102 (51%)
Frame = +3
Query: 171 LPNTPETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREP 350
+P TP T + N + ++ +G ++N+ ++ + R +GKV A LDVF EP
Sbjct: 290 MPLTPATSKVFNDESFSRMKNGVRIINVARGGVIDEDALVRALDSGKVAQAALDVFTEEP 349
Query: 351 LPPESPLWQHPRVTITPHVAAITRPAEAVEYISRTIAQLEKG 476
+S L H VT+TPH+ A T EA E ++ IA+ G
Sbjct: 350 PAKDSKLVLHENVTVTPHLGAST--VEAQEGVAIEIAEAVVG 389
>01_01_0902 - 7099260-7099778,7100291-7100704,7101579-7102010
Length = 454
Score = 56.4 bits (130), Expect = 3e-08
Identities = 40/139 (28%), Positives = 67/139 (48%)
Frame = +3
Query: 3 LGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNT 182
+G G +G VA+ ++ + P+ + RT++ PG + EL+A VL+ P
Sbjct: 291 IGLGRIGLAVAKRVEAFDCPVNYYQRTKQDHPGYTYYPSVVELAA---SSDVLVVACPLN 347
Query: 183 PETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREPLPPE 362
T I+N++++E L L+N+ + + G++ GA LDVF EP PE
Sbjct: 348 EHTRHIVNREVMEALGPRGVLINIGRGPHVDEAAMVAALADGRLGGAGLDVFEDEPNVPE 407
Query: 363 SPLWQHPRVTITPHVAAIT 419
+ L V + PHV + T
Sbjct: 408 ALLGM-DNVVLVPHVGSAT 425
Score = 55.6 bits (128), Expect = 6e-08
Identities = 38/134 (28%), Positives = 66/134 (49%)
Frame = +3
Query: 3 LGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNT 182
LG G +G VA+ + + P+ SR+ K +P + + +L+A C VL+
Sbjct: 153 LGLGRIGLAVAKRAEAFDCPISYHSRSEKPFPKYKFYPNVVDLAA---NCDVLVVACSLN 209
Query: 183 PETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREPLPPE 362
PET I+N+++++ L L+N+ + + + ++ GA LDVF EP PE
Sbjct: 210 PETRHIVNRKVIDALGPEGVLINIARGAHVDEPELISALLEKRLGGAGLDVFEDEPFAPE 269
Query: 363 SPLWQHPRVTITPH 404
L++ V + PH
Sbjct: 270 Q-LFELDNVVLVPH 282
>04_01_0036 + 436592-437572
Length = 326
Score = 54.4 bits (125), Expect = 1e-07
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 1/153 (0%)
Frame = +3
Query: 3 LGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNT 182
+G G +GS +A+ L+ + + +R R+ F +L+A VL+ T
Sbjct: 160 IGLGSIGSAIARRLEAFGCVVSYHNRRRREDVAYAYFPTATDLAA---SSDVLVVACALT 216
Query: 183 PETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREP-LPP 359
ET I+++ +L+ L + ++N+ + + R G+V GA L+VF+ EP +PP
Sbjct: 217 AETRRIVDRGVLDALGERGVVVNVARGANVDEAELVRALAEGRVAGAGLEVFDDEPNVPP 276
Query: 360 ESPLWQHPRVTITPHVAAITRPAEAVEYISRTI 458
E LW V +TPH A T E++ +SR +
Sbjct: 277 E--LWAMDNVVLTPHQAIFT--PESMADLSRVV 305
>06_03_0085 +
16431503-16431568,16431981-16432152,16432402-16432464,
16432792-16433332,16433419-16433543,16433988-16434100,
16434565-16434678
Length = 397
Score = 54.0 bits (124), Expect = 2e-07
Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Frame = +3
Query: 3 LGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAG---REELSAFLSQCRVLINLL 173
+GAG +G + Q L+ + L R + P ++ G E+L A L +C V++
Sbjct: 216 VGAGRIGRLLLQRLKPFNCNLLYHDRLKID-PELEKEIGAKYEEDLDAMLPKCDVIVINT 274
Query: 174 PNTPETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREPL 353
P T +T G+ N++ + K+ G ++N ++ + +G+V G DV+ +P
Sbjct: 275 PLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPA 334
Query: 354 PPESPLWQHPRVTITPHVAAITRPAE 431
P + P P +TPH++ T A+
Sbjct: 335 PKDHPWRYMPNHAMTPHISGTTIDAQ 360
>06_03_0086 +
16458881-16458952,16461795-16461966,16462621-16462889,
16463045-16463316,16463409-16463533,16463852-16463964,
16464579-16464692
Length = 378
Score = 52.4 bits (120), Expect = 5e-07
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Frame = +3
Query: 3 LGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAG---REELSAFLSQCRVLINLL 173
+GAG +G + Q L+ + L R + P ++ G E+L A L +C V++ +
Sbjct: 197 VGAGRIGRLLLQRLKPFNCNLMYHDRVKID-PELEKEIGAKYEEDLDAMLPKCDVVVINM 255
Query: 174 PNTPETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREPL 353
P T +T G+ N++ + K+ G ++N ++ + +G V G DV+ +P
Sbjct: 256 PLTEKTRGMFNKERIAKMKKGVTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPA 315
Query: 354 PPESPLWQHPRVTITPHVAAIT 419
P + P P +TPH + T
Sbjct: 316 PKDHPWRYMPNHAMTPHCSGTT 337
>04_01_0038 + 446314-446787,446829-447350
Length = 331
Score = 48.8 bits (111), Expect = 6e-06
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 1/140 (0%)
Frame = +3
Query: 3 LGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNT 182
+G G +G VA+ L + + SR+ K+ + + EL+A + VL+ T
Sbjct: 167 VGLGSIGGLVARRLAAFGCVIAYNSRSPKASAPYKFYPSVRELAA---ESDVLVLSCALT 223
Query: 183 PETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREP-LPP 359
ET ++ ++++E L G L+N+ ++ + R G + GA LDV+ EP +PP
Sbjct: 224 EETRRMVGREVMEALGKGGVLVNVGRGGLVDEAELVRCLREGVLGGAGLDVYENEPEVPP 283
Query: 360 ESPLWQHPRVTITPHVAAIT 419
E LW V ++ H A IT
Sbjct: 284 E--LWGMDNVVLSDHRAVIT 301
>04_01_0035 - 433848-434372,434905-435381
Length = 333
Score = 45.6 bits (103), Expect = 6e-05
Identities = 40/139 (28%), Positives = 62/139 (44%)
Frame = +3
Query: 3 LGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNT 182
+G G +GS +A+ LQ + + SR K F +L+A VLI
Sbjct: 168 IGLGSIGSLIAKRLQAFGCTISYNSRRPKDSVSYNYFPDVTDLAAASD---VLIVACALN 224
Query: 183 PETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREPLPPE 362
ET I++ +LE L ++N+ ++ + R G++ GA LDVF +EP P
Sbjct: 225 DETRHIVDSSVLEALGKDGVVVNIARGGIVDEAELIRALKEGRIAGAGLDVFEKEPDVP- 283
Query: 363 SPLWQHPRVTITPHVAAIT 419
+ L V +T H A T
Sbjct: 284 AELLSMDNVVLTAHEAVFT 302
>06_03_0975 -
26471438-26472109,26472189-26472284,26472372-26472482,
26472494-26472530,26472566-26472576,26472674-26473050,
26474310-26474895
Length = 629
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +3
Query: 321 AMLDVFNREPLPPESPLWQHPRVTITPHVAAITRPAEAVEYISRTIAQLEKG 476
A LDVF EP P +S L H VT+TPH+ A T +EA E ++ IA+ G
Sbjct: 338 AALDVFTEEPPPKDSKLVHHEHVTVTPHLGAST--SEAQEGVALEIAEAVLG 387
>07_01_1060 +
9330217-9330219,9330490-9330561,9330773-9330917,
9331006-9331133,9331689-9331803,9331881-9331984,
9332356-9332568,9332637-9332657
Length = 266
Score = 37.9 bits (84), Expect = 0.012
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +3
Query: 234 GAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAA 413
G+YL+N+ +L +G + G +DV EP PE P+ + V ITPH A
Sbjct: 190 GSYLVNIARGHILDYDAVFDHLKSGHLGGLGIDVAWTEPYDPEDPILKFSNVIITPHTAG 249
Query: 414 IT 419
+T
Sbjct: 250 VT 251
>03_03_0134 +
14732622-14732830,14733202-14733316,14733429-14733632,
14733862-14733990,14734077-14734244,14734920-14735177,
14736051-14736096,14736574-14736601,14737206-14737295,
14738132-14738204,14738291-14738319,14738425-14738548,
14738741-14738851,14739082-14739182,14739263-14739365
Length = 595
Score = 31.1 bits (67), Expect = 1.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 397 HHMSPRLPVPLKLWSTFLAPLPSSKKGRGLRASRP 501
H + L VP +LW + LA LPS R R RP
Sbjct: 21 HAAAAALAVPARLWGSLLARLPSLSDRRPRRRRRP 55
>03_01_0183 -
1474202-1474276,1474511-1474627,1474791-1474847,
1475149-1475196,1475313-1476101,1476516-1476646,
1476769-1476937,1477954-1478541
Length = 657
Score = 31.1 bits (67), Expect = 1.4
Identities = 22/89 (24%), Positives = 38/89 (42%)
Frame = +3
Query: 180 TPETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREPLPP 359
T +T+ I+N L+ + GA+++N ++ + I G + G LD
Sbjct: 235 TNDTMHILNADCLQHVKPGAFIVNTGSCQLIDDCALKQLLIDGTIAGCALD-------GA 287
Query: 360 ESPLWQHPRVTITPHVAAITRPAEAVEYI 446
E P W V P+V + R A+ E +
Sbjct: 288 EGPQWMEAWVREMPNVLILPRSADYSEEV 316
>06_01_0251 - 1890143-1891180
Length = 345
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 479 LPFFELGNGARNVLHSFSGTGNRGD-MWCYRHAWMLPERT 363
L +ELG V F G D WC R WM+P RT
Sbjct: 307 LRVYELGKRTEEVRDPFKGVAESADGTWC-RPYWMIPART 345
>02_05_0773 +
31654985-31655365,31655486-31655610,31655712-31656026,
31656145-31656314,31656408-31656751
Length = 444
Score = 29.9 bits (64), Expect = 3.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 560 QERVMYPVDLHMHTVASTHAYSTLSDYIAQAKXKGIKLFAITDH 691
+ R V+LH H+ S + S + + +A G+K+ A+TDH
Sbjct: 94 RRRPRVAVELHAHSTCSDGSLSPAA-LVQRAHRNGVKVLALTDH 136
>05_01_0137 + 917533-917814,918080-918352
Length = 184
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 498 STCPQPSPLFRAGQWCEKCTP 436
+T P P P FR +C +CTP
Sbjct: 66 TTSPPPPPSFRRRSFCRRCTP 86
>01_05_0740 -
24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 29.5 bits (63), Expect = 4.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 440 LHSFSGTGNRGDMWCYRHAWMLPERTF 360
LH+ N GD W +W+LP R+F
Sbjct: 850 LHTLPLMPNDGDTWSVMQSWVLPTRSF 876
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 348 PLPPESPLWQHPRVTITPHVAAITRP 425
P+ P +P QHPR+T PH A + +P
Sbjct: 290 PVAPTAPP-QHPRITQQPHSAPLLQP 314
>03_06_0277 + 32814621-32814996,32815419-32815558,32816074-32816160
Length = 200
Score = 28.7 bits (61), Expect = 7.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 101 ARPRFTGSTPATQRKAPGLQTLSNFTAQYA 12
A P +G TPAT PG +T T QY+
Sbjct: 135 ANPTTSGGTPATPAGTPGSKTTPASTTQYS 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,858,826
Number of Sequences: 37544
Number of extensions: 606660
Number of successful extensions: 1682
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1674
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2834967080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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