Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0516.Seq
         (976 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   4e-08
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   1e-07
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)          38   0.012
SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)          32   0.81 
SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   3.3  
SB_40038| Best HMM Match : zf-ZPR1 (HMM E-Value=6.2e-23)               29   5.7  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           28   10.0 

>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
 Frame = +3

Query: 3   LGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGR-EELSAFLSQCRVLINLLPN 179
           +G G +GS VA   + ++  +   +RTRK    +++ A    +L   L +   ++     
Sbjct: 154 VGLGGVGSAVANRAKGFKMRILYHNRTRKEDKELETGAEYCSKLDELLKESDFVVLCCAL 213

Query: 180 TPETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREPLPP 359
           T ET  +I    L ++   A L+N+    ++     +     G ++GA LDV   EPLP 
Sbjct: 214 TDETRHLITAAQLSQMKSSATLINVARGGLVNHDDLTTALQNGVIRGAALDVTEPEPLPH 273

Query: 360 ESPLWQHPRVTITPHVAAIT 419
             PL   P V +TPHV A T
Sbjct: 274 GHPLLALPNVIVTPHVGATT 293


>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
 Frame = +3

Query: 3   LGAGVLGSKVAQSLQTWRFPLRCWSRTRK----SWPGVQSFAGREELSAFLSQCRVLINL 170
           +G G +G  VA+  + +   +  ++RTRK    S  GV   +G ++L   L +   ++  
Sbjct: 156 IGLGNIGLAVAKRAKGFDMRILYYNRTRKMKAESELGVHYCSGLKDL---LKESDYVMLS 212

Query: 171 LPNTPETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREP 350
              TPET  II    L ++   A L+N+    ++     +     G ++GA LD  + EP
Sbjct: 213 CALTPETKHIIKSAELSQMKPSATLINVARGGLVNHDDLTTALQNGVIRGAALDATDPEP 272

Query: 351 LPPESPLWQHPRVTITPHVAAITRPAEAVEYISRTIAQLEKGER 482
           LP + PL       +TPH+A+ T  A    Y+   +  +  G R
Sbjct: 273 LPHDHPLLALSNAIVTPHIASATLHARRA-YVKNALLNVNAGLR 315


>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
          Length = 401

 Score = 37.9 bits (84), Expect = 0.012
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
 Frame = +3

Query: 171 LPNTPETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREP 350
           +P  P T G++N + +     G Y+LN+    ++ +    R   +G V GA LDVF  EP
Sbjct: 70  VPLIPPTKGMLNDKTIGMCKKGVYILNVARGGIIDEEALLRGLESGHVGGAGLDVFVTEP 129

Query: 351 --------------LPPESPLWQHPRVTITPHVAAITRPAE 431
                         L     L +HP+V   PH+ A T  A+
Sbjct: 130 PTGKLTKAKCALYDLVQVPDLVKHPKVIACPHLGASTEEAQ 170


>SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)
          Length = 779

 Score = 31.9 bits (69), Expect = 0.81
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 306 GKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAA 413
           G+++GA LDV   EP+P + PL       + PH+ +
Sbjct: 212 GEIRGAGLDVTVPEPIPLDHPLLTLKNCVVLPHIGS 247


>SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 273 WKMTCSRRWIAGKVKGAML-DVFNREPLPP--ESPLWQ 377
           W  TCSRRW + K+K  ++    +   LPP   S LWQ
Sbjct: 401 WLKTCSRRWPSEKLKRKIVTQGIHLAALPPSKNSDLWQ 438


>SB_40038| Best HMM Match : zf-ZPR1 (HMM E-Value=6.2e-23)
          Length = 406

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 122 PSGKALHARPRFTGSTPATQRKAPGLQTLSNF 27
           PSGK+L +R +   + P      PG + LSNF
Sbjct: 345 PSGKSLPSRSQSASAVPRVWSPKPGYKGLSNF 376


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 543 KDSRNPDALLVAVARSTCPQPSPLFRAGQWCE 448
           ++ R P  LL    +  CP+P  + R  +W E
Sbjct: 146 REDRQPHVLLHQAVQEECPKPERVRRLNEWVE 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,081,432
Number of Sequences: 59808
Number of extensions: 654514
Number of successful extensions: 1572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2883962642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)