Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0516.Seq
(976 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83219-1|CAB05694.1| 322|Caenorhabditis elegans Hypothetical pr... 53 3e-07
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 33 0.23
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 33 0.23
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 33 0.23
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 33 0.23
Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical pr... 32 0.54
U53149-5|AAA96121.2| 427|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z72502-4|CAA96589.1| 750|Caenorhabditis elegans Hypothetical pr... 29 6.6
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 29 6.6
>Z83219-1|CAB05694.1| 322|Caenorhabditis elegans Hypothetical
protein C31C9.2 protein.
Length = 322
Score = 53.2 bits (122), Expect = 3e-07
Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 2/160 (1%)
Frame = +3
Query: 3 LGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNT 182
LG G +GS+VA LQ + + + L Q + +P
Sbjct: 151 LGLGRIGSEVAVRLQAFGMKVIGFDPMVTKEQAEAKNIELLSLEQIWPQADYITVHVPLI 210
Query: 183 PETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREPLPPE 362
+T +IN++ L K G ++N+ ++ ++ AG KGA DVF +EP P
Sbjct: 211 KQTENLINKETLAKCKKGVRIINVARGGIVNEVDLVESLNAGHAKGAAFDVFEQEP-PTF 269
Query: 363 SPLWQHPRVTITPHVAAITRPAE--AVEYISRTIAQLEKG 476
L HP V TPH+ A T A+ I+ I Q KG
Sbjct: 270 RELIDHPLVIATPHLGASTIDAQLRVASEIADNIVQYNKG 309
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 40.3 bits (90), Expect = 0.002
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 186 ETVGIINQQLLEKLPDGAYLLNLRVVFMLWKMTCSRRWIAGKVKGAMLDVFNREPLPPE- 362
ET GIIN L + G Y++N ++ + + G VKGA LDV + P
Sbjct: 393 ETRGIINADSLRQCKSGVYIVNTSHAGLINENDLAAALKNGHVKGAALDVHDSVRFDPNC 452
Query: 363 -SPLWQHPRVTITPHVAAIT 419
+PL P + TPH A +T
Sbjct: 453 LNPLVGCPNIINTPHSAWMT 472
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 33.5 bits (73), Expect = 0.23
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 431 SCGVHFSHHCPARKRGEGCGQV 496
S G+H H+CPA G+GC QV
Sbjct: 667 SSGIHCEHNCPAGSYGDGCQQV 688
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 33.5 bits (73), Expect = 0.23
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 431 SCGVHFSHHCPARKRGEGCGQV 496
S G+H H+CPA G+GC QV
Sbjct: 667 SSGIHCEHNCPAGSYGDGCQQV 688
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 33.5 bits (73), Expect = 0.23
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 431 SCGVHFSHHCPARKRGEGCGQV 496
S G+H H+CPA G+GC QV
Sbjct: 667 SSGIHCEHNCPAGSYGDGCQQV 688
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 33.5 bits (73), Expect = 0.23
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 431 SCGVHFSHHCPARKRGEGCGQV 496
S G+H H+CPA G+GC QV
Sbjct: 667 SSGIHCEHNCPAGSYGDGCQQV 688
>Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical
protein M01F1.5 protein.
Length = 604
Score = 32.3 bits (70), Expect = 0.54
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +3
Query: 306 GKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAI 416
G V AML V N + P +WQ V+ITP VAAI
Sbjct: 47 GIVSAAMLYVPNASGIKPLDSVWQEIIVSITPGVAAI 83
>U53149-5|AAA96121.2| 427|Caenorhabditis elegans Hypothetical
protein C24B5.1 protein.
Length = 427
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +3
Query: 96 PGVQSFAGR---EELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLRVVF 266
P ++S GR + L F V + L NT + I + ++L KLP YLL L +
Sbjct: 63 PAMESTPGRSLIQNLYYFYMPFCVFVGLTGNTMVWILIRSNRMLNKLPTNVYLLCLAAMS 122
Query: 267 MLWKMTCSRRWIAGKVKGAMLDVF 338
++ ++ WI D+F
Sbjct: 123 SIFLLSLLVFWIEEVAYIYFYDIF 146
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical
protein ZC101.2f protein.
Length = 2389
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 540 DSRNPDALLVAVARSTCPQPSPLFRAGQWCEKCTPQLQRDG 418
D PD L + V + CP P L G CE C P +R G
Sbjct: 620 DRYTPDGLALEVEQCVCP-PGYL---GTSCEDCAPGYERSG 656
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical
protein ZC101.2e protein.
Length = 3375
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 540 DSRNPDALLVAVARSTCPQPSPLFRAGQWCEKCTPQLQRDG 418
D PD L + V + CP P L G CE C P +R G
Sbjct: 620 DRYTPDGLALEVEQCVCP-PGYL---GTSCEDCAPGYERSG 656
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical
protein ZC101.2c protein.
Length = 2295
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 540 DSRNPDALLVAVARSTCPQPSPLFRAGQWCEKCTPQLQRDG 418
D PD L + V + CP P L G CE C P +R G
Sbjct: 620 DRYTPDGLALEVEQCVCP-PGYL---GTSCEDCAPGYERSG 656
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical
protein ZC101.2a protein.
Length = 2482
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 540 DSRNPDALLVAVARSTCPQPSPLFRAGQWCEKCTPQLQRDG 418
D PD L + V + CP P L G CE C P +R G
Sbjct: 620 DRYTPDGLALEVEQCVCP-PGYL---GTSCEDCAPGYERSG 656
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical
protein ZC101.2b protein.
Length = 1160
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 540 DSRNPDALLVAVARSTCPQPSPLFRAGQWCEKCTPQLQRDG 418
D PD L + V + CP P L G CE C P +R G
Sbjct: 620 DRYTPDGLALEVEQCVCP-PGYL---GTSCEDCAPGYERSG 656
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical
protein ZC101.2f protein.
Length = 2389
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 540 DSRNPDALLVAVARSTCPQPSPLFRAGQWCEKCTPQLQRDG 418
D PD L + V + CP P L G CE C P +R G
Sbjct: 620 DRYTPDGLALEVEQCVCP-PGYL---GTSCEDCAPGYERSG 656
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical
protein ZC101.2e protein.
Length = 3375
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 540 DSRNPDALLVAVARSTCPQPSPLFRAGQWCEKCTPQLQRDG 418
D PD L + V + CP P L G CE C P +R G
Sbjct: 620 DRYTPDGLALEVEQCVCP-PGYL---GTSCEDCAPGYERSG 656
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical
protein ZC101.2c protein.
Length = 2295
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 540 DSRNPDALLVAVARSTCPQPSPLFRAGQWCEKCTPQLQRDG 418
D PD L + V + CP P L G CE C P +R G
Sbjct: 620 DRYTPDGLALEVEQCVCP-PGYL---GTSCEDCAPGYERSG 656
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical
protein ZC101.2a protein.
Length = 2482
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 540 DSRNPDALLVAVARSTCPQPSPLFRAGQWCEKCTPQLQRDG 418
D PD L + V + CP P L G CE C P +R G
Sbjct: 620 DRYTPDGLALEVEQCVCP-PGYL---GTSCEDCAPGYERSG 656
>Z72502-4|CAA96589.1| 750|Caenorhabditis elegans Hypothetical
protein C08B6.7 protein.
Length = 750
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = -3
Query: 503 RGRLARNPLPFFELGNGARNVLHSFSGTGNRGDM 402
+G++ RNP+ +++G G+ +H FS +G+ G M
Sbjct: 289 KGKVQRNPVTRWQIGEGS---IHQFSFSGSDGKM 319
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 540 DSRNPDALLVAVARSTCPQPSPLFRAGQWCEKCTPQLQRDG 418
D PD L + V + CP P L G CE C P +R G
Sbjct: 619 DRYTPDGLALEVEQCVCP-PGYL---GTSCEDCAPGYERSG 655
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,738,289
Number of Sequences: 27780
Number of extensions: 470150
Number of successful extensions: 1222
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -