Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0516.Seq
         (976 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   1.0  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              24   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   5.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   7.3  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 718 CGASSISGXMIGDRKKFNALXFGLGNVI 635
           CGA  I G  +GD  K   +  GL  +I
Sbjct: 211 CGAGFIDGLGLGDNTKAAVMRLGLMEII 238


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 653 WPGQCNHLMCYMHVCWQRY 597
           WP +   L CYM+  W+++
Sbjct: 63  WP-ETRQLKCYMYCLWEQF 80


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -3

Query: 338  KNIQHCAFNFARYPAPRAGHLPQHEHHAQVEEI 240
            + + HCA N    P PR G      H    +EI
Sbjct: 1690 EELNHCAPNRRCPPPPRMGSAEGLSHRGMEDEI 1722


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
 Frame = -2

Query: 525 DALLVAVARSTCPQPSPLFRAGQW---CEKCTP 436
           D ++  +  S  P+PS     G W   C  C+P
Sbjct: 362 DGMIEVIPLSAIPEPSKNPAMGHWQMSCVACSP 394


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 494 VDRATATNKASGFLLSLGGN 553
           VD ATA +K+  +  SL GN
Sbjct: 138 VDAATAGDKSCRYTASLAGN 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,358
Number of Sequences: 438
Number of extensions: 5848
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)