Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0514.Seq
         (909 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   1.1  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   5.8  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   7.6  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 11   LFIFLIFCVISYLGIFFCSLQRKRRLFQFV 100
            + + L  C+I   GI+ CSL  ++++ +F+
Sbjct: 1158 IIMILSGCIIFTEGIWICSLIHRKKIVKFL 1187


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = -3

Query: 505 KRKHIYIFIV----TAF*LLPEIHHPYLNQYSY 419
           K   IY F++    T   +L  I  PYL  Y+Y
Sbjct: 21  KSNKIYSFLLLTTLTLLVILSSIDRPYLKSYTY 53


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 535 FICKLTLI*LCD 570
           F+C L+LI LCD
Sbjct: 264 FVCLLSLIILCD 275


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,685
Number of Sequences: 336
Number of extensions: 3886
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25341085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)