Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0514.Seq
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z78544-5|CAB01759.2|  324|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AY398504-1|AAQ96213.1|  324|Caenorhabditis elegans SEL-7 protein.      29   3.5  
AL031265-2|CAE48506.1|  324|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : short...    29   4.6  
Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical
           protein F57A8.5 protein.
          Length = 352

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 306 IVYFSAFSLRNDKGGVKKLILF*KNILTITYFYTAIYKENEIRSTL 169
           I YF  F   N+   + K I+F   IL +TYF   +   NE RS +
Sbjct: 168 ISYFLNFDFVNELHDIDKKIIFQHTILKLTYFCGVMRTVNEKRSKM 213


>Z78544-5|CAB01759.2|  324|Caenorhabditis elegans Hypothetical
           protein K04G11.2 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 183 IRSTLTYYDWK*LQYEIQSNK--LILSHKHTN*KSRRFRCKE 64
           + +T+ Y+ W  L  E Q +K  LILSH   N K R +  +E
Sbjct: 219 VEATMKYFKWDLLSTESQLSKAKLILSHLKNNAKVRNWTLRE 260


>AY398504-1|AAQ96213.1|  324|Caenorhabditis elegans SEL-7 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 183 IRSTLTYYDWK*LQYEIQSNK--LILSHKHTN*KSRRFRCKE 64
           + +T+ Y+ W  L  E Q +K  LILSH   N K R +  +E
Sbjct: 219 VEATMKYFKWDLLSTESQLSKAKLILSHLKNNAKVRNWTLRE 260


>AL031265-2|CAE48506.1|  324|Caenorhabditis elegans Hypothetical
           protein K04G11.2 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 183 IRSTLTYYDWK*LQYEIQSNK--LILSHKHTN*KSRRFRCKE 64
           + +T+ Y+ W  L  E Q +K  LILSH   N K R +  +E
Sbjct: 219 VEATMKYFKWDLLSTESQLSKAKLILSHLKNNAKVRNWTLRE 260


>AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 9 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 700 PGFPXSRRCKRRPGNXNTTHYRANWVPGP 614
           PG P  +  K  PGN  T H+  N  P P
Sbjct: 253 PGLPGPQGPKGEPGNPGTCHHCQNRAPAP 281


>Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.5 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -2

Query: 407 LYITFFFINIVTSTIILTTYVDY*VQIKWNMTIALFILVHFRLGTIKVVLKN*SYSKKT 231
           ++I   FI+I  + IIL  Y+DY  Q   N +  + I  H  L T+ +++ +  Y   T
Sbjct: 244 VFIPLVFISIPVAYIILAVYLDYYNQAA-NNSALIAIAFHGILSTLTMLIVHTPYRHAT 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,418,836
Number of Sequences: 27780
Number of extensions: 335158
Number of successful extensions: 518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)