Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0514.Seq
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   5.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   8.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.9  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +2

Query: 65  SLQRKRRLFQFVCLCDRINLLL*IS 139
           +L+ K +  +++ +C+R+NL L +S
Sbjct: 22  ALENKFKTTRYLSVCERLNLALSLS 46


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 413 RTLYITFFFINIVTSTIIL 357
           R L   FF   IV++T+IL
Sbjct: 430 RALLCVFFLTTIVSTTVIL 448


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 11  LFIFLIFCVISYLGIFFCSLQRKRRLFQFV 100
           LFI ++ C +SYL   FC  +    +FQ +
Sbjct: 417 LFIAIV-CFVSYLIGLFCITEGGMYVFQLL 445


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 11  LFIFLIFCVISYLGIFFCSLQRKRRLFQFV 100
           LFI ++ C +SYL   FC  +    +FQ +
Sbjct: 470 LFIAIV-CFVSYLIGLFCITEGGMYVFQLL 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,346
Number of Sequences: 438
Number of extensions: 4051
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)