Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0509.Seq
         (928 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    25   0.63 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.4  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    22   7.8  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 334 SFATLAISSFHSLYRNNRTSQHLYLNLPNNSI 239
           +F+T A S   S +RNNR   ++     NNSI
Sbjct: 381 TFSTTANSCRSSTFRNNRDEYNVCFRPRNNSI 412


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 525 IAVNYLVSISTL*NMN*YVLPSSLCVYPL--NVERCSLLTIS*FVSSLTIVVSS*HSRSV 698
           + V  L+S++   N+    LP      PL      C +  ++  V  LT+VV + H R+ 
Sbjct: 245 LGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVV-LTVVVLNYHHRTA 303

Query: 699 NIH 707
           +IH
Sbjct: 304 DIH 306


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 525 IAVNYLVSISTL*NMN*YVLPSSLCVYPL--NVERCSLLTIS*FVSSLTIVVSS*HSRSV 698
           + V  L+S++   N+    +P++    PL      C +  ++  V  LT+VV + H R+ 
Sbjct: 245 LGVTILLSLTVFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVV-LTVVVLNYHHRTA 303

Query: 699 NIH 707
           +IH
Sbjct: 304 DIH 306


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 525 IAVNYLVSISTL*NMN*YVLPSSLCVYPL--NVERCSLLTIS*FVSSLTIVVSS*HSRSV 698
           + V  L+S++   N+    LP      PL      C +  ++  V  LT+VV + H R+ 
Sbjct: 245 LGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVV-LTVVVLNYHHRTA 303

Query: 699 NIH 707
           +IH
Sbjct: 304 DIH 306


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 525 IAVNYLVSISTL*NMN*YVLPSSLCVYPL--NVERCSLLTIS*FVSSLTIVVSS*HSRSV 698
           + V  L+S++   N+    LP      PL      C +  ++  V  LT+VV + H R+ 
Sbjct: 245 LGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVV-LTVVVLNYHHRTA 303

Query: 699 NIH 707
           +IH
Sbjct: 304 DIH 306


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 525 IAVNYLVSISTL*NMN*YVLPSSLCVYPL--NVERCSLLTIS*FVSSLTIVVSS*HSRSV 698
           + V  L+S++   N+    +P++    PL      C +  ++  V  LT+VV + H R+ 
Sbjct: 245 LGVTILLSLTVFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVV-LTVVVLNYHHRTA 303

Query: 699 NIH 707
           +IH
Sbjct: 304 DIH 306


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like
          protein protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -3

Query: 92 NVRMSKIKNSVNLL 51
          +V++SKI N+VNL+
Sbjct: 52 SVKLSKIPNNVNLM 65


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,784
Number of Sequences: 336
Number of extensions: 4482
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25961683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)