Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0509.Seq
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   5.0  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 400  KGLLALVKYYGTAISSYQSVAFSFATLAISSFHSLYRNNRTSQHLYLNLPNNSIRLHVVQ 221
            KGLL L+ Y G  ++ Y   A  FA  ++     +   N T     L++ + +IR H  Q
Sbjct: 1191 KGLLYLILYLGNYMNDYVRQAKGFAIGSLQRLPLIKNANNTKS--LLHILDITIRKHFPQ 1248

Query: 220  F 218
            F
Sbjct: 1249 F 1249


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 222 NFAQIYGKYEGI*HESLLLY 163
           N+  +Y +Y+GI H SLLL+
Sbjct: 83  NWEALYSQYDGILHASLLLF 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,628,296
Number of Sequences: 5004
Number of extensions: 72967
Number of successful extensions: 178
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)