Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0509.Seq
         (928 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    25   2.5  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    25   3.3  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   9.9  

>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 495 SIEK*EIGKARKTIIRKRHPTILFPLQFTNFERVYW 388
           S+ K  I K +   +  ++  ++FP+ F  F   YW
Sbjct: 418 SVIKASIPKIKDVNVIDKYSRVIFPVSFAAFNAGYW 453


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 773 TLGERAKCXPIVXGTTFDKAIXGHHGD 853
           T GE  KC     G   D+ + GH GD
Sbjct: 847 TTGECLKCIHNTAGPHCDQCLPGHFGD 873



 Score = 24.2 bits (50), Expect = 5.7
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +2

Query: 62  RCF*FYSSSHFAIRIRPIEICRRYKPTIYIT*VRYSNRDSCHI 190
           RC   + ++ + +++     C     T +     YSNR SC +
Sbjct: 49  RCIPEFENAAYQLQVEATNTCGDETDTDFCVQTGYSNRKSCDV 91


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 259 NLPNNSIRLHVVQFCTNLWE 200
           ++P+N +R   ++F  +LWE
Sbjct: 44  DIPHNEVRNWAIRFGVDLWE 63


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 913,654
Number of Sequences: 2352
Number of extensions: 17235
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100882044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)