Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0509.Seq
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF025466-2|AAB71033.1|  261|Caenorhabditis elegans Hypothetical ...    29   3.6  

>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
           protein C10C6.6 protein.
          Length = 1178

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 443 GILRYYFLFNLQILKGFIGASKILRYCNIFLPVRCIFICN 324
           G   YY L  L     F+  + +L +C+  +PVRC  +C+
Sbjct: 43  GYEEYYELGMLGYAAIFVILALVLLFCHWMMPVRCFLMCS 82


>AF025466-2|AAB71033.1|  261|Caenorhabditis elegans Hypothetical
           protein T23F4.1 protein.
          Length = 261

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 812 GTTFDKAIXGHHGDAD 859
           GTT D +I  HHGDAD
Sbjct: 175 GTTIDASIQAHHGDAD 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,900,829
Number of Sequences: 27780
Number of extensions: 402834
Number of successful extensions: 833
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)