Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0509.Seq
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    27   0.24 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   9.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   9.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   9.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   9.1  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 546 KQDNLLLSKAIRKCQDFSIEK*EIGKARKTIIRKRHPTILFPLQFTNFERVYW 388
           KQ+   +  AIR+    SI +  + K +   I  ++  I+FP+ F  F  +YW
Sbjct: 434 KQNKPKVLHAIRR--GASILRVSMPKIKDVNIIDKYSRIIFPVSFMLFNAIYW 484


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 843 WPHMALSNVVPXTIGXHLALSPKVHFSISEKDNKCA 736
           W    L + VP ++G H A  P V     E+   CA
Sbjct: 150 WLLAGLISFVPISLGLHRANEPVVLDDSKEEHPTCA 185


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 444 RHPTILFPLQFTNFERVYW 388
           R   I+FP+ F  F  +YW
Sbjct: 446 RRSRIVFPVAFIIFNILYW 464


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 444 RHPTILFPLQFTNFERVYW 388
           ++  I+FP+ F  F  +YW
Sbjct: 406 KYSRIVFPVCFVCFNLMYW 424


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 444 RHPTILFPLQFTNFERVYW 388
           ++  I+FP+ F  F  +YW
Sbjct: 406 KYSRIVFPVCFVCFNLMYW 424


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 351 TSPLHFHLQPWLSLV 307
           T P+H  + PWL L+
Sbjct: 536 TVPIHTWIHPWLPLL 550


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 444 RHPTILFPLQFTNFERVYW 388
           ++  I+FP+ F  F  +YW
Sbjct: 344 KYSRIVFPVCFVCFNLMYW 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,195
Number of Sequences: 438
Number of extensions: 5421
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)