Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0509.Seq
         (928 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54170.1 68418.m06745 expressed protein weak similarity to SP...    30   2.5  
At5g47530.1 68418.m05868 auxin-responsive protein, putative simi...    28   7.6  

>At5g54170.1 68418.m06745 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 449

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 700 IFTSISNSAFCPCAFIVFFANAEVNLGRKSQM 795
           +  S+S  AF P AF++ F    VN GRK Q+
Sbjct: 405 VVCSLSGGAFVPPAFLLGFGKRFVNGGRKRQL 436


>At5g47530.1 68418.m05868 auxin-responsive protein, putative similar
           to auxin-induced protein AIR12 (GI:11357190)
           [Arabidopsis thaliana]; similar to stromal cell derived
           factor receptor 2 (GI:20381292) [Mus musculus]
          Length = 395

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 382 VKYYGTAISSYQ-SVAFSFATLAISSFHSLYRNNRTSQHLYLNLP 251
           V+ Y + ISSYQ S+  +  +  +S   + Y+NN    +  LNLP
Sbjct: 104 VRAYTSPISSYQTSLLEAELSFNVSQLSATYQNNEMVIYAILNLP 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,563,379
Number of Sequences: 28952
Number of extensions: 366934
Number of successful extensions: 726
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)