Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0505.Seq
         (960 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    30   0.56 
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    27   3.0  
SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz...    27   3.9  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   5.2  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   6.9  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   6.9  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    26   9.1  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    26   9.1  

>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 554 DSRNLGRFYDSGAEDI-SSSGSD--CSTGTRXEERTDQALPKLDEATEKXNV 700
           + +N+GR Y    E + SSSGSD    T +R  E T + + K DE     N+
Sbjct: 708 EMKNVGRAYPEILEKLSSSSGSDEFLETSSRTSENTKEKIDKDDEGFAITNI 759


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 706 TRETNFCLSDXLVYAFNDIVFNKIFFGCXFSGXLAYRYA 822
           +R+ N C    +  A NDI  +++   C F   + Y  A
Sbjct: 24  SRDDNACFGSYIAVAQNDIAPDQLLISCPFEYAITYNKA 62


>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 207 PMSTKVGISFHKGANR-LNGERFSHGN--VNWSSV 112
           PM+TK+G  ++KG      G++  HG   V WS V
Sbjct: 14  PMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQWSRV 48


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 136 WERELVICNGDGCAITSLS 80
           WE +  +C+  GCA+ SL+
Sbjct: 71  WENDNAMCSNQGCAVKSLN 89


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 715 TNFCLSDXLVYAFNDIVFNKIFFGCXFSGXLAYRYAFR 828
           TN  ++  L+  FN   + K+FFG  F   + Y+  FR
Sbjct: 24  TNLLITTILLCFFNATTYWKLFFGAMFD-FIHYQLLFR 60


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 271 DNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPV 390
           ++L++ +  D+   +   E   DD + F  Q   +YS P+
Sbjct: 476 EDLEIPLLSDYSDSENISEKSSDDEEAFEKQVTSSYSSPI 515


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 256 YVDNDLELVIVSVDSWPDVHKSGDQLPQRSKQTEWRKV 143
           Y D D E+    VDS P + +  +Q+  RS  T   K+
Sbjct: 156 YADKDSEVPTDWVDSDPRILRDAEQVQLRSFSTSMHKI 193


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -2

Query: 563 FYCRLFYRLVLLVRSASLAIGTTRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAALEF 390
           F+ RL     LL+RS  + I    S+  +L+   L+G    R P+   S ++SAA EF
Sbjct: 3   FFKRLRLHTRLLLRSKFVLI----SLILLLNLGLLLGIQIYRDPAFPGSLISSAAYEF 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,482
Number of Sequences: 5004
Number of extensions: 56587
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)