Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0505.Seq
         (960 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1393 - 26245105-26246862                                         30   3.1  
04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587     29   5.5  
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958...    29   5.5  
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804     29   7.3  
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    29   7.3  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   7.3  
03_02_0091 + 5574528-5577254                                           28   9.6  

>07_03_1393 - 26245105-26246862
          Length = 585

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -3

Query: 166 KQTEWRKVQPWERELVICNGDGCAITSLSRAGK---AVTVAKPAKAMKTAKRRGENI 5
           ++  WR+ + + R  V+  GDGCA+  ++R GK       A+P +  K +K R   +
Sbjct: 199 REKSWRRYRDYRR-FVLVPGDGCAL-DINRVGKFRSGTNAARPPR-QKGSKNRNPRV 252


>04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587
          Length = 230

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -3

Query: 253 VDNDLELVIVSVDSWPD--VHKSGDQLPQRSKQTE-WR 149
           VDN  EL++V    WPD   H  G    +RS++ E WR
Sbjct: 39  VDNGGELILVQRMLWPDHYAHDDGSYRTKRSRKYEAWR 76


>03_03_0216 +
           15495395-15495566,15495648-15495733,15495824-15495874,
           15496005-15496390,15496760-15496898,15497540-15497595,
           15497712-15497782,15497876-15498081
          Length = 388

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 515 WRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTG 631
           WR +   +A    D   LG+ Y   +E++S+S SDC +G
Sbjct: 2   WRFLGASKALTSSDVWFLGKCYKLSSEELSNS-SDCESG 39


>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
          Length = 1209

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = -1

Query: 633 VPVLQSLPLELMSSAPES*K----RPRFLLSSFLQARPS-CTERQSR 508
           V VLQS+P +  SS+P S K     P F+ SS  ++R S C  ++ R
Sbjct: 256 VVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRCKAKKKR 302


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 127  HVPMAEPFAI-QSVCSFVEADPHFCGHRAKN 216
            HVPM EP  I  S C  V AD    G   KN
Sbjct: 1336 HVPMQEPLRIASSCCEIVNADQVCAGEVGKN 1366


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 104 VSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 220
           +S  + +F     NL   S   PLW  +P F D+G ++Y
Sbjct: 92  ISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130


>03_02_0091 + 5574528-5577254
          Length = 908

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 432 WIPRRDGADQRKC**NEKYRARCTYCETGAPY 527
           W+ R DGA++R      +Y+ RC  C  G  +
Sbjct: 70  WLSRVDGAEKRVAKLRREYQRRCCSCGGGGAF 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,932,609
Number of Sequences: 37544
Number of extensions: 363693
Number of successful extensions: 1030
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)