Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0505.Seq
         (960 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   40   0.002
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 36   0.064
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 32   0.60 
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)                    29   5.6  
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      28   9.8  
SB_33217| Best HMM Match : PPAK (HMM E-Value=7.1)                      28   9.8  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/66 (28%), Positives = 37/66 (56%)
 Frame = +1

Query: 256 KDYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDG 435
           K+Y+ + + +KV+   I + G  ++ E +H    S+F  +Y+LP     + V++ +T DG
Sbjct: 48  KNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDG 106

Query: 436 YLVVTA 453
            L + A
Sbjct: 107 LLHIEA 112


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 35.5 bits (78), Expect = 0.064
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = +1

Query: 256 KDYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDG 435
           K+Y+ + +  KV+   + VQG +   E +      +F  T++LP      +VT+ +++ G
Sbjct: 15  KEYRPEEISFKVENGVVKVQG-RHVNEGEFGFELKEFRRTFTLPEGIDPENVTSRISNHG 73

Query: 436 YLVVTA 453
           +L + A
Sbjct: 74  HLHIEA 79


>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 32.3 bits (70), Expect = 0.60
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 259 DYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVF-ASQFFHTYSLPVNSSAADVTAELTSDG 435
           D+K + + VKV G  + V+  QE +E  H  F A QF   + LP       +   L  DG
Sbjct: 108 DFKPEEVDVKVYGHELSVRARQECEE--HGFFTARQFNRHFVLPREVDMDTLVPRLGKDG 165

Query: 436 YLVVTA 453
            L + A
Sbjct: 166 VLYIEA 171



 Score = 31.5 bits (68), Expect = 1.0
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 256 KDYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDG 435
           +++K + +  KV+   I V G Q   E +    + +F   Y+LP     + ++  +  DG
Sbjct: 14  REFKPEEITCKVENGKIKVSGLQR-HESEEGFDSKEFRRCYNLPEGVDESSISTRIAEDG 72

Query: 436 YLVVTA 453
            L V A
Sbjct: 73  MLHVEA 78


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 503 LLRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGTRXEER 649
           L R WR+V   R C +  S    +  D GA  + +  + C TGT  E R
Sbjct: 341 LARVWRTVPPQRVCLEVPSEKARKIPDDGALTVRTEATGC-TGTANEIR 388


>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
          Length = 405

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -3

Query: 223 SVDSWPDVHKSGDQLPQRSKQTEWRKVQPWEREL--VICNGDGCAITSLSRAGKAVTVAK 50
           +V S+  + KSG  +P R++ T +R   PW +E+  ++C  D   +T      ++ TV  
Sbjct: 135 AVSSYRFLCKSGHYIPLRTRSTLFR--NPWTKEIEFLVCTND--VLTEFDLPPQSNTVVV 190

Query: 49  PAKAMK 32
           P  + +
Sbjct: 191 PPTSQR 196


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 316 GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 405
           G+   +E+D DV+A      Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274


>SB_33217| Best HMM Match : PPAK (HMM E-Value=7.1)
          Length = 144

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 518 RSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGTRXEERTDQALPKLDEAT 685
           R  +  R CR+  +R + R  ++ +ED + + +    G R +  +D  +P+L   T
Sbjct: 36  RVAEYNRRCREALAREMKREAEASSEDAARAETPHQEGARGDSLSDAWIPELSFTT 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,149,570
Number of Sequences: 59808
Number of extensions: 423894
Number of successful extensions: 1058
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2824376637
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)