Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0505.Seq
         (960 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25620.1 68415.m03069 protein phosphatase 2C, putative / PP2C...    31   1.5  
At2g04900.1 68415.m00509 expressed protein                             29   4.6  
At1g34320.1 68414.m04259 expressed protein contains Pfam domain ...    29   4.6  
At2g46860.1 68415.m05847 inorganic pyrophosphatase, putative [so...    29   6.1  
At2g20780.1 68415.m02442 mannitol transporter, putative similar ...    29   6.1  

>At2g25620.1 68415.m03069 protein phosphatase 2C, putative / PP2C,
           putative
          Length = 392

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 130 RELVICNGDGCAITSLSRAGKAVTVAKPAKAMKTAKRR 17
           R LV+ N   C    LSR GKA+ +++  K M + +RR
Sbjct: 201 RSLVVANAGDCRAV-LSRQGKAIEMSRDHKPMSSKERR 237


>At2g04900.1 68415.m00509 expressed protein
          Length = 128

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -2

Query: 497 TRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTG 384
           T S++ ++ T +L+ A +T+YP+     +T+  + F+G
Sbjct: 58  TASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSG 95


>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 657

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 364 FFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNT 489
           F H     +N++A+D+ +     G     +P++ENVD  K+T
Sbjct: 19  FAHVNGHHLNNNASDLNSHSGESGLKDDPSPVTENVDDNKHT 60


>At2g46860.1 68415.m05847 inorganic pyrophosphatase, putative
           [soluble] / pyrophosphate phospho-hydrolase, putative /
           PPase, putative strong similarity to SP|Q43187 Soluble
           inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate
           phospho- hydrolase) (PPase) {Solanum tuberosum};
           contains Pfam profile PF00719: inorganic pyrophosphatase
          Length = 216

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 256 KDYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHT 375
           +DYKK+  K     DF+  + + EA +   D++A    HT
Sbjct: 174 EDYKKNENKKVAVNDFLPSESAHEAIQYSMDLYAEYILHT 213


>At2g20780.1 68415.m02442 mannitol transporter, putative similar to 
           mannitol transporter [Apium graveolens var. dulce]
           GI:12004316; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 526

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 521 SASLAIGTTRSVFFVLSTFSL--IGAVTTRYPSEVSSAVTSAALEFT 387
           +A++A+G T++VF + +TF +  +G     Y S +   +    L FT
Sbjct: 340 AATVAVGVTKTVFILFATFLIDSVGRKPLLYVSTIGMTLCLFCLSFT 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,993,891
Number of Sequences: 28952
Number of extensions: 296607
Number of successful extensions: 852
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2314656624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)