Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0503.Seq
         (884 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q18ER3 Cluster: DNA polymerase II large subunit (EC 2.7...    34   5.5  
UniRef50_A2EJ38 Cluster: Ubiquitin family protein; n=4; Trichomo...    33   7.3  
UniRef50_Q097Q6 Cluster: Vitamin K-dependent gamma-carboxylase; ...    33   9.7  

>UniRef50_Q18ER3 Cluster: DNA polymerase II large subunit (EC
           2.7.7.7) (Pol II) [Contains: Hwa polC 1 intein (Hwa pol
           II 1 intein); Hwa polC 2 intein (Hwa pol II 2 intein)];
           n=3; Halobacteriaceae|Rep: DNA polymerase II large
           subunit (EC 2.7.7.7) (Pol II) [Contains: Hwa polC 1
           intein (Hwa pol II 1 intein); Hwa polC 2 intein (Hwa pol
           II 2 intein)] - Haloquadratum walsbyi (strain DSM 16790)
          Length = 2289

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 516 NYIRWCKKHGXPKYPPYTYIF*D 448
           N +RW KKH  P +P YTY++ D
Sbjct: 498 NAMRWAKKHDIPLHPAYTYLWHD 520


>UniRef50_A2EJ38 Cluster: Ubiquitin family protein; n=4; Trichomonas
           vaginalis G3|Rep: Ubiquitin family protein - Trichomonas
           vaginalis G3
          Length = 457

 Score = 33.5 bits (73), Expect = 7.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 576 IXAFFSEAHRHIXKSSKKLFNYIR-WCKKHGXPKYPPYTYIF*D 448
           + +FF +  RHI  S +++F++I  WC K    KY   T+ F D
Sbjct: 350 VVSFFEDTLRHINLSDREIFDFITFWCPKLIDMKYIKITFHFDD 393


>UniRef50_Q097Q6 Cluster: Vitamin K-dependent gamma-carboxylase;
           n=2; Cystobacterineae|Rep: Vitamin K-dependent
           gamma-carboxylase - Stigmatella aurantiaca DW4/3-1
          Length = 477

 Score = 33.1 bits (72), Expect = 9.7
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -1

Query: 758 FLA*GWXDELTVHPTRRYKF*GSSIVTRLPHP 663
           FLA GW DEL V  T R+ + G S V  LP P
Sbjct: 43  FLAYGWVDELFVRATFRFTYWGFSWVPVLPSP 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,445,145
Number of Sequences: 1657284
Number of extensions: 12191181
Number of successful extensions: 21759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21734
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)