Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0502.Seq
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    28   1.6  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    26   6.3  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    26   8.3  

>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 1   LVPNSARAGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEE 138
           L P   RAGR S         K+ G + +  NPR P P   F++ +
Sbjct: 179 LPPAGLRAGRGSQISASLAWLKTGGASAAPSNPRQPPPTSNFSNRK 224


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 127 NDEEYCGDYDQFDLANEVDTLEQFLKL 207
           N E     YD +D  ++VD+LE+ LKL
Sbjct: 455 NQEWLHNFYDAYDALDDVDSLERALKL 481


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 58  NAKSSGGTVSDPNPRSPLPPQMFNDEEY 141
           NAK S G +       PLPPQ FN  +Y
Sbjct: 394 NAKQSSGKLG------PLPPQSFNSSDY 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,413
Number of Sequences: 5004
Number of extensions: 28000
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)