Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0502.Seq
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1454 - 27222004-27222296,27222389-27222500                       36   0.043
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848...    29   5.0  
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646...    28   8.7  

>08_02_1454 - 27222004-27222296,27222389-27222500
          Length = 134

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 64  KSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEV-DTLEQF 198
           K  GG    P  R  LPPQ  ++ + CGD+   DL +EV + L+QF
Sbjct: 13  KKKGGVAKKPISRKKLPPQNCSESQDCGDH---DLGDEVEEQLQQF 55


>04_04_1390 -
           33184233-33184478,33184601-33184705,33184783-33184890,
           33184967-33185101,33185263-33185363,33185495-33185564,
           33185642-33185758,33186001-33186138,33186371-33186439,
           33186556-33186645,33186758-33186940,33187020-33187052
          Length = 464

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 10  NSARAGRESDKDFMQNNAKSSGGTVSDPNPRS 105
           N  +      KDF+  N K  G +VSDP  RS
Sbjct: 23  NGLKGAEGGWKDFLARNDKKFGASVSDPKKRS 54


>10_08_0973 -
           21963754-21963936,21964089-21964383,21964504-21964616,
           21964729-21964913,21965054-21965201,21965297-21965575,
           21965657-21965761,21965936-21966178,21966426-21966486,
           21966734-21966792
          Length = 556

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 43  DFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDL 168
           D+ +NNA  +   V DP PR P+    F D     +  +FD+
Sbjct: 60  DYAKNNAWEALFHVDDPGPRVPIAKGKFLDVNQALEVVRFDI 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,643,296
Number of Sequences: 37544
Number of extensions: 199764
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)