Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0502.Seq
         (893 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42854| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)                   31   1.3  
SB_57494| Best HMM Match : DUF1213 (HMM E-Value=5.7)                   31   1.7  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        29   6.7  
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_42854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +1

Query: 94  NPRSPLPPQMFNDEEYCGDYDQFDLANEVDTLEQFLKL 207
           N  + LPPQ+FN E+YCG YD+   ANE  TLE+FLKL
Sbjct: 58  NDETALPPQIFNGEQYCGGYDELFNANEDGTLEEFLKL 95


>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
          Length = 744

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 348 IETS-EKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKEASPIYKIW 524
           I TS EK K+ +P  +N            +     ++E+  DV++Q    K+ +  ++ W
Sbjct: 402 ISTSKEKYKQENPASQNETPAQLPAESQESA----NSEIFIDVSEQAYRRKKTAQTFEHW 457

Query: 525 LEMKQKKN 548
           LEMK+ +N
Sbjct: 458 LEMKRNQN 465


>SB_57494| Best HMM Match : DUF1213 (HMM E-Value=5.7)
          Length = 159

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 52  QNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTLEQFL 201
           + +AKSS  T   P+ ++PL     +++E   DYD+   +     +E++L
Sbjct: 89  EKDAKSSKSTGDPPSDKAPLTATTSDNQETVKDYDRKSTSGSKKPMEKYL 138


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 82  VSDPNPRSPLPPQMFNDEEYCGDYDQF 162
           ++D  P  P+PP +F+D++   D D F
Sbjct: 494 LTDEPPSKPIPPPLFDDDDEDDDIDWF 520


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 34  SDKDFMQNNAKSSGGTVSD-PNPRSPLPPQM 123
           +   +++NN K + GT  D P P +P PP M
Sbjct: 76  NSNQYVKNNCKKTCGTCGDPPPPATPPPPTM 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,131,040
Number of Sequences: 59808
Number of extensions: 200191
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)