Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0502.Seq
         (893 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27025.1 68416.m03381 expressed protein                             31   1.4  
At5g38410.1 68418.m04643 ribulose bisphosphate carboxylase small...    29   5.5  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    28   9.6  

>At3g27025.1 68416.m03381 expressed protein 
          Length = 299

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 13  SARAGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCG 147
           S RA   SD   ++ N+ S  G   DPNP        F+++E+CG
Sbjct: 37  SLRAQVFSDVQDIRTNSFSFYGHTHDPNPSKVEQDLRFDEDEFCG 81


>At5g38410.1 68418.m04643 ribulose bisphosphate carboxylase small
           chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)
           identical to SP|P10798 Ribulose bisphosphate carboxylase
           small chain 3B, chloroplast precursor (EC 4.1.1.39)
           (RuBisCO small subunit 3B) {Arabidopsis thaliana}
          Length = 181

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 28  RESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTL 189
           R+++KD    +  S+GG VS      P+  + F    Y  D    +LA EVD L
Sbjct: 37  RKTNKDI--TSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYL 88


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 37   DKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEY---CGDYDQFDLANEVDTLEQF 198
            D ++  +  K  G  +S+ +  S     + ++ +Y   C D D  DL NE+D  E +
Sbjct: 1090 DDNYNHHKIKGCGIRLSEDDESSDDDDDLSSETDYSDECEDSDDSDLGNEIDYSEDY 1146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,525,464
Number of Sequences: 28952
Number of extensions: 153315
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)