Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0501.Seq
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    28   1.0  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   7.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   9.5  

>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 86  AELQQPEDHGHYYAEHGQALSSDRXRATNTKAINLIKAS--LNKQLSEYVLGLSL 244
           AE+Q     G YYAEHG   ++ +     T  ++ +  +  +   +++++L + L
Sbjct: 356 AEIQSLLIEGKYYAEHGSKTTAMQTNFVRTNCMDCLDRTNVIQTSIAQFILNMQL 410


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +3

Query: 93  FSNQKTTVITTL-NTDRLYLATGRGLQIRKLLTL*RHH*ISN-CLNMF*VCLLPNELEFI 266
           FSN  T++ITTL +TD     TGR   +R+L  L  H+ I+N  L+ F V L   +L  +
Sbjct: 480 FSNNDTSIITTLESTDE----TGR---LRQLAKLFDHNAIANGSLSNFSVLLAIAKLSIL 532

Query: 267 *IVGI 281
             V I
Sbjct: 533 GKVSI 537


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 484 KINTHFKNVTS-DFTFHNILD*IRSHRTNIFTTRLPRHVTFELSLNQVQVF 335
           +I TH K   S DF+ HN +D        +  T       FE+ +NQ+Q+F
Sbjct: 389 QILTHCKLPESQDFSMHNDVD-------ELLHTIPSNGAVFEMKINQIQIF 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,461
Number of Sequences: 5004
Number of extensions: 42224
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)