Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0498.Seq
         (504 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    29   0.018
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    29   0.018

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 29.5 bits (63), Expect = 0.018
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 281 YCCLRQFLRTSSDGLVYRICLQVSFVVQLAXWEILLSHIRFPLPRHMPTXLL 126
           + C R   R+S   ++Y I LQV FV  ++ W  L+      LP +  T L+
Sbjct: 29  FTCTRSNFRSSKLLILYNIILQVLFVSFVSYWLYLVLEADDMLPIYKNTYLI 80


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 0.018
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 281 YCCLRQFLRTSSDGLVYRICLQVSFVVQLAXWEILLSHIRFPLPRHMPTXLL 126
           + C R   R+S   ++Y I LQV FV  ++ W  L+      LP +  T L+
Sbjct: 47  FTCTRSNFRSSKLLILYNIILQVLFVSFVSYWLYLVLEADDMLPIYKNTYLI 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,203
Number of Sequences: 336
Number of extensions: 1644
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)