Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0498.Seq
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    50   3e-07
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   2.8  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   8.5  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 24/51 (47%), Positives = 30/51 (58%)
 Frame = -1

Query: 270 APIPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLW 118
           AP+ K F +  G++D  T Q RGST TLGNF K      + TY   TP+LW
Sbjct: 180 APVTKRFLQLAGIEDCYT-QSRGSTKTLGNFVKAAFAAASLTYGILTPNLW 229


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = -1

Query: 171 PHTXPIAKTYAYXTPDLWRISR*LSLHTQSSKSKTVIV*QLNKRICL 31
           PH+ PIAKTY        RI   +   T   K  +VIV   N RICL
Sbjct: 826 PHSHPIAKTY--------RILNIIEF-TSKRKCMSVIVRMPNGRICL 863


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = -2

Query: 272 LRQFLRTSSDGLVYRICLQVSFVVQLAXWEILLSHIRFPLPRHMPTXLLTCGGYPAD*VS 93
           L  +    S GL+    L +S  +  A   IL ++  F LPR +P   L         +S
Sbjct: 415 LLSWFNLGSHGLILANILNLSLRICFALRFILHNYKDFSLPRSLPRPFLLALSILLSIIS 474

Query: 92  ILRVQSLRQS 63
              V+  R+S
Sbjct: 475 SFLVKHWRES 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,460
Number of Sequences: 5004
Number of extensions: 26523
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)