Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0498.Seq
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0756 + 5819367-5820038,5820847-5821005                           58   5e-09
03_06_0386 + 33555682-33556344,33557138-33557299                       57   9e-09
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     37   0.008
12_01_0493 + 3917257-3917769,3917842-3918067,3918460-3918527,391...    30   0.92 
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241...    27   6.5  
02_05_1160 + 34580680-34582659                                         27   8.6  

>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 39/113 (34%), Positives = 53/113 (46%)
 Frame = -1

Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
           GAI L K     P+R+G  G    +   T  CKVT       +              +A 
Sbjct: 139 GAIILAKLSVV-PVRRGYWGNKIGKPH-TVPCKVTGKC--GSVTVRMVPAPRGSGIVAAH 194

Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWRISR 106
           +PK   ++ G++D+ T   RGST TLGNF K     + KTY + TPD WR +R
Sbjct: 195 VPKKVLQFAGIEDVFTSS-RGSTKTLGNFVKATFDCLMKTYGFLTPDFWRETR 246


>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 38/110 (34%), Positives = 51/110 (46%)
 Frame = -1

Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
           GAI L K     P+R+G  G    +   T  CKVT       +              +A 
Sbjct: 136 GAIILAKLSVV-PVRRGYWGNKIGQPH-TVPCKVTGKC--GSVTVRMVPAPRGSGIVAAR 191

Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWR 115
           +PK   ++ G++D+ T   RGST TLGNF K     + KTY + TPD WR
Sbjct: 192 VPKKVLQFAGIEDVFTSS-RGSTKTLGNFVKATFDCLMKTYGFLTPDFWR 240


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -1

Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDL 121
           +PK   ++ G++D+ T   RGST TL NF K H    A  + Y  P L
Sbjct: 80  VPKKVLKFAGIEDVFTSS-RGSTKTLSNFVK-HQMKRALNFQYKPPPL 125


>12_01_0493 +
           3917257-3917769,3917842-3918067,3918460-3918527,
           3919251-3919574,3919691-3920128
          Length = 522

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 275 CLRQFLRTSSDGLVYRICLQVSFVVQLA 192
           C+RQ L+  + GLV  +C  +SF+V+ A
Sbjct: 6   CVRQILKAKAAGLVATMCAYMSFIVRRA 33


>05_05_0051 +
           21923402-21923763,21923861-21923951,21924048-21924196,
           21924279-21924522,21924664-21924768,21924842-21925024,
           21925118-21925319,21925896-21926372,21926680-21926771,
           21927265-21927444
          Length = 694

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 374 GKAXKRPFARS-PGXFWSLKFRVDXCPLRGYGYCCLRQFLRTSS 246
           G+A   PF  S    +  LK +V   PL  Y YCC  + + ++S
Sbjct: 614 GQAMIGPFVVSLKSVYQKLKLQVKSWPLLAYHYCCFMENVISNS 657


>02_05_1160 + 34580680-34582659
          Length = 659

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 295 FVGMVIVVCANS*ELLQMAWCTGFAYRSASWFNWH 191
           F+   I+V A   ++L   WC G+A   +S F W+
Sbjct: 285 FMSRTIIVSAGLLQILVPGWCIGYALHLSSTF-WN 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,049,644
Number of Sequences: 37544
Number of extensions: 188489
Number of successful extensions: 309
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)