Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0498.Seq
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)               63   1e-10

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 41/110 (37%), Positives = 54/110 (49%)
 Frame = -1

Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
           GAI L K     P+R+G  G    +   T  CKVT      ++              SAP
Sbjct: 101 GAIILAKLSVI-PVRRGYWGNKIGKPH-TVPCKVTGKCGSTRV--RLIPAPRGTGIVSAP 156

Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWR 115
           +PK   +  G++D  T   RG T TLGNFAK     I++TYAY TPD+W+
Sbjct: 157 VPKKLLQMAGIEDCYTST-RGQTATLGNFAKATFAAISETYAYLTPDMWK 205



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 35/117 (29%), Positives = 46/117 (39%)
 Frame = -3

Query: 430 LQXXSVXTHPKGXTGVNXLGKPKNGPLQGHPXXFGP*NSGLXPAPFVGMVIVVCANS*EL 251
           L   SV    +G  G N +GKP   P +      G     L PAP  G  IV      +L
Sbjct: 105 LAKLSVIPVRRGYWG-NKIGKPHTVPCKV-TGKCGSTRVRLIPAPR-GTGIVSAPVPKKL 161

Query: 250 LQMAWCTGFAYRSASWFNWHXGKFC*ATYXSHCQDICLXXS*LVEDIPLTKSPYSEF 80
           LQMA      Y S        G F  AT+ +  +        + ++   TK+PY EF
Sbjct: 162 LQMAGIED-CYTSTRGQTATLGNFAKATFAAISETYAYLTPDMWKETVFTKTPYQEF 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,634,889
Number of Sequences: 59808
Number of extensions: 216190
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)