Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0498.Seq
(504 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal prot... 69 3e-12
U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal prot... 69 3e-12
AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p pro... 69 3e-12
AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA... 69 3e-12
X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml prot... 68 6e-12
>U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 69.3 bits (162), Expect = 3e-12
Identities = 46/110 (41%), Positives = 54/110 (49%)
Frame = -1
Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
GAI L K P+R+G G + T CKVT + SAP
Sbjct: 136 GAIILAKLSVV-PVRRGYWGNKIGKPH-TVPCKVTGKC--GSVSVRLIPAPRGTGIVSAP 191
Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWR 115
+PK G++D T RGSTGTLGNFAK IAKTYAY TPDLW+
Sbjct: 192 VPKKLLTMAGIEDCYTSA-RGSTGTLGNFAKATYAAIAKTYAYLTPDLWK 240
Score = 29.5 bits (63), Expect = 2.7
Identities = 35/117 (29%), Positives = 47/117 (40%)
Frame = -3
Query: 430 LQXXSVXTHPKGXTGVNXLGKPKNGPLQGHPXXFGP*NSGLXPAPFVGMVIVVCANS*EL 251
L SV +G G N +GKP P + G + L PAP G IV +L
Sbjct: 140 LAKLSVVPVRRGYWG-NKIGKPHTVPCKV-TGKCGSVSVRLIPAPR-GTGIVSAPVPKKL 196
Query: 250 LQMAWCTGFAYRSASWFNWHXGKFC*ATYXSHCQDICLXXS*LVEDIPLTKSPYSEF 80
L MA Y SA G F ATY + + L +++PL +PY +
Sbjct: 197 LTMAGIED-CYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAY 252
>U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 69.3 bits (162), Expect = 3e-12
Identities = 46/110 (41%), Positives = 54/110 (49%)
Frame = -1
Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
GAI L K P+R+G G + T CKVT + SAP
Sbjct: 136 GAIILAKLSVV-PVRRGYWGNKIGKPH-TVPCKVTGKC--GSVSVRLIPAPRGTGIVSAP 191
Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWR 115
+PK G++D T RGSTGTLGNFAK IAKTYAY TPDLW+
Sbjct: 192 VPKKLLTMAGIEDCYTSA-RGSTGTLGNFAKATYAAIAKTYAYLTPDLWK 240
Score = 29.5 bits (63), Expect = 2.7
Identities = 35/117 (29%), Positives = 47/117 (40%)
Frame = -3
Query: 430 LQXXSVXTHPKGXTGVNXLGKPKNGPLQGHPXXFGP*NSGLXPAPFVGMVIVVCANS*EL 251
L SV +G G N +GKP P + G + L PAP G IV +L
Sbjct: 140 LAKLSVVPVRRGYWG-NKIGKPHTVPCKV-TGKCGSVSVRLIPAPR-GTGIVSAPVPKKL 196
Query: 250 LQMAWCTGFAYRSASWFNWHXGKFC*ATYXSHCQDICLXXS*LVEDIPLTKSPYSEF 80
L MA Y SA G F ATY + + L +++PL +PY +
Sbjct: 197 LTMAGIED-CYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAY 252
>AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p
protein.
Length = 267
Score = 69.3 bits (162), Expect = 3e-12
Identities = 46/110 (41%), Positives = 54/110 (49%)
Frame = -1
Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
GAI L K P+R+G G + T CKVT + SAP
Sbjct: 136 GAIILAKLSVV-PVRRGYWGNKIGKPH-TVPCKVTGKC--GSVSVRLIPAPRGTGIVSAP 191
Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWR 115
+PK G++D T RGSTGTLGNFAK IAKTYAY TPDLW+
Sbjct: 192 VPKKLLTMAGIEDCYTSA-RGSTGTLGNFAKATYAAIAKTYAYLTPDLWK 240
Score = 29.5 bits (63), Expect = 2.7
Identities = 35/117 (29%), Positives = 47/117 (40%)
Frame = -3
Query: 430 LQXXSVXTHPKGXTGVNXLGKPKNGPLQGHPXXFGP*NSGLXPAPFVGMVIVVCANS*EL 251
L SV +G G N +GKP P + G + L PAP G IV +L
Sbjct: 140 LAKLSVVPVRRGYWG-NKIGKPHTVPCKV-TGKCGSVSVRLIPAPR-GTGIVSAPVPKKL 196
Query: 250 LQMAWCTGFAYRSASWFNWHXGKFC*ATYXSHCQDICLXXS*LVEDIPLTKSPYSEF 80
L MA Y SA G F ATY + + L +++PL +PY +
Sbjct: 197 LTMAGIED-CYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAY 252
>AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA
protein.
Length = 267
Score = 69.3 bits (162), Expect = 3e-12
Identities = 46/110 (41%), Positives = 54/110 (49%)
Frame = -1
Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
GAI L K P+R+G G + T CKVT + SAP
Sbjct: 136 GAIILAKLSVV-PVRRGYWGNKIGKPH-TVPCKVTGKC--GSVSVRLIPAPRGTGIVSAP 191
Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWR 115
+PK G++D T RGSTGTLGNFAK IAKTYAY TPDLW+
Sbjct: 192 VPKKLLTMAGIEDCYTSA-RGSTGTLGNFAKATYAAIAKTYAYLTPDLWK 240
Score = 29.5 bits (63), Expect = 2.7
Identities = 35/117 (29%), Positives = 47/117 (40%)
Frame = -3
Query: 430 LQXXSVXTHPKGXTGVNXLGKPKNGPLQGHPXXFGP*NSGLXPAPFVGMVIVVCANS*EL 251
L SV +G G N +GKP P + G + L PAP G IV +L
Sbjct: 140 LAKLSVVPVRRGYWG-NKIGKPHTVPCKV-TGKCGSVSVRLIPAPR-GTGIVSAPVPKKL 196
Query: 250 LQMAWCTGFAYRSASWFNWHXGKFC*ATYXSHCQDICLXXS*LVEDIPLTKSPYSEF 80
L MA Y SA G F ATY + + L +++PL +PY +
Sbjct: 197 LTMAGIED-CYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAY 252
>X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml protein
S2 protein.
Length = 267
Score = 68.1 bits (159), Expect = 6e-12
Identities = 45/110 (40%), Positives = 54/110 (49%)
Frame = -1
Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
GAI L K P+R+G G + T CKVT + SAP
Sbjct: 136 GAIILAKLSVV-PVRRGYWGNKIGKPH-TVPCKVTGKC--GSVSVRLIPAPRGTGIVSAP 191
Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWR 115
+P+ G++D T RGSTGTLGNFAK IAKTYAY TPDLW+
Sbjct: 192 VPRKLLTMAGIEDCYTSA-RGSTGTLGNFAKATYAAIAKTYAYLTPDLWK 240
Score = 29.5 bits (63), Expect = 2.7
Identities = 35/117 (29%), Positives = 47/117 (40%)
Frame = -3
Query: 430 LQXXSVXTHPKGXTGVNXLGKPKNGPLQGHPXXFGP*NSGLXPAPFVGMVIVVCANS*EL 251
L SV +G G N +GKP P + G + L PAP G IV +L
Sbjct: 140 LAKLSVVPVRRGYWG-NKIGKPHTVPCKV-TGKCGSVSVRLIPAPR-GTGIVSAPVPRKL 196
Query: 250 LQMAWCTGFAYRSASWFNWHXGKFC*ATYXSHCQDICLXXS*LVEDIPLTKSPYSEF 80
L MA Y SA G F ATY + + L +++PL +PY +
Sbjct: 197 LTMAGIED-CYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAY 252
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,345,154
Number of Sequences: 53049
Number of extensions: 320126
Number of successful extensions: 563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1804766976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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