Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0498.Seq
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    58   3e-09
Z71264-5|CAA95829.1|  241|Caenorhabditis elegans Hypothetical pr...    29   1.9  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 25/52 (48%), Positives = 33/52 (63%)
 Frame = -1

Query: 270 APIPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWR 115
           AP+PK      G++D  T   +GST TLGNFAK     + +TY+Y TPDLW+
Sbjct: 203 APVPKKLLHMAGIEDCYTAA-KGSTATLGNFAKATYAALQRTYSYLTPDLWK 253


>Z71264-5|CAA95829.1|  241|Caenorhabditis elegans Hypothetical
           protein K07G5.2 protein.
          Length = 241

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 222 LTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWR 115
           L  Q+RG++G   +F +PHT    K   +   D WR
Sbjct: 192 LRQQIRGTSGVKVDFGRPHTHEFGKE-THVEEDTWR 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,120,680
Number of Sequences: 27780
Number of extensions: 154873
Number of successful extensions: 228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)